| Name | Position | Email & Phone | Research field | Location | OrcidID | ResearcherID | Address | Office | Research Interests | Education and Training | Summary | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 | Mylonas Constantinos | Director | mylonas@hcmr.gr +30 2810337878 | Fish reproduction | Main Building | aaa92021 | 0000-0003-1805-4392 | Constantinos Chrysanthos Mylonas | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 108 | Main Building | - Fish reproductive physiology - Induced spawning - Sperm enhancement and quality | Doctor of Philosophy in Marine-Estuarine and Environmental Sciences (1996), Center of Marine Biotechnology, University of Maryland, College Station, Maryland, USA (under Professor Yonathan Zohar). Dissertation title: Endocrine control of reproduction in striped bass and white bass (genus Morone) and applications of gonadotropin-releasing hormone agonist (GnRHa)-delivery systems for the induction of spawning. (366 pp.). Master of Science in Zoology (1991), North Carolina State University, Raleigh, North Carolina, USA (under Drs. Craig V. Sullivan and Jeffrey Hinshaw). Thesis title: Induced maturation of cultured salmonids: an investigation of the effectiveness of a GnRH analogue and triiodothyronine, and the effects of the treatment on progeny development. (104 pp.). Bachelor of Science (1988) with Summa Cum Laude Honors (Grade Point Average 3.92/4.00, Summa Cum Lauda) in Wildlife and Fisheries Sciences, Aquaculture option, Texas A&M University, College Station, Texas, USA. | My research field may be summarized in (a) the study of fish reproductive biology and endocrinology, (b) the identification of the dysfunctions exhibited by female and male broodstocks in captive conditions, and (c) the development of pharmacological methods for the control of reproduction, induction of spawning and improvement of sperm production in fish of interest for the aquaculture industry. In this framework, I was involved in mainly applied research aiming at the optimization of broodstock management methods, focusing on marine fishes. My research gave me the opportunity to be in close contact with the aquaculture industry, and to study more than twenty different cultured fish species. More recently, my research focuses on the study of large benthic and pelagic fishes such as the wreckfish (Polyprion americanus), greater amberjack (Seriola dumerili) and the Atlantic bluefin tuna (Thunnus thynnus), species which we succeeded in controlling their reproduction in captivity. These successes have opened a new chapter in the potential of marine aquaculture, not only in Greece and Europe, but world wide, since all three species are cosmopolitan in distribution and highly demanded in the seafood markets. |
 | Arvanitidis Christos | Research Director | arvanitidis@hcmr.gr +302810337748 | Biodiversity | Main Building | https://gr.linkedin.com/in/christos-arvanitidis-a67a8b5 | 0000-0002-6924-5255 | C. Arvanitidis | Gouves, Herakleion | Office 52 | Main Building | Marine Biodiversity, Functional Diversity, Biodiversity Informatics, Transitional Ecosystems, Quality control and assessment of the coastal marine ecosystems, Τaxonomy | 1988-1994 PhD in Marine Biology, School of Biology, Aristotelian University 1983-1988 BSc in Biology, School of Biology, Aristotelian University of Thessaloniki | Dr Christos Arvanitidis LifeWatch ERIC CEO, Seville, Spain. Research Director IMBBC, HCMR. Former head of Biodiversity laboratory. Involved in >70 research projects, coordinated 10. Research Funding ID: >40 M€. With >100 peer-reviewed articles. Associate Editor: Diversity, Frontiers in Marine Science, Biodiversity Data Journal; Handling Editor: Mediterranean Marine Science; Guest Editor: Marine Ecology Progress Series, Journal of Sea Research. Reviewer in >45 journals. Member of: Pool of experts, biodiversity drafting team UN World Ocean Assessment; National expert on GES Descriptor “Biodiversity”, EU (MSFD); ICES Task Group 6 on seafloor integrity (EU MSDF); Executive Board of European Network of Marine Research Institutes and Stations; Scientific Advisory Council International Polychaete Association; Scientific Council of the Institut Méditerranéen de Biodiversité et d'Ecologie marine et continentale. Coordinator of the LifeWatchGreece Research Infrastructure. Research focus on marine biodiversity, biodiversity informatics, functional diversity, coastal ecosystems. Working on comparisons of marine biodiversity information patterns deriving from various biological organization levels and scales of observation, by developing new approaches to explore their interrelationships. |
 | Divanach (deceased) Pascal | Research Director | divanach@hcmr.gr + 30 2810 337767 | Aquaculture | Aqualabs | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Aqualabs | Biology Aquaculture Oceanografy | Main research interests focus on : a) Evaluation of fish biological performances for possible specific diversification, performant domestication and cost effective production; b) biological control of marine finfish segments that are limiting factors of production; c) development of sustainable, ergonomic, friendly environmental and high quality systems of mariculture. | |||||
 | Fountoulaki Eleni | Research Director | efoudo@hcmr.gr +302291076491 | Fish nutrition | Anavissos | 0000-0001-5501-9524 | AAX-7177-2020 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Anavissos | * Nutritional requirements of marine fish * Digestion Physiology * Sustainable aquaculture | My research field may be summarized in 1) Nutritional requirements in ω3 and ω6 essential fatty acids, 2) Evaluation of the nutritional quality of raw materials as potential ingredients in marine diets, 3) Fish meal and fish oil substitution with sustainable raw materials in feeds for cultured fish 4) Effects of plant raw materials and feeds on digestion physiology - digestive enzymes. All these years I worked close with the aquaculture industry in the frame work of various projects (EU, National, etc) trying to solve problems related to nutrition and feeding. I have developed various methods of analysis for the Applied nutrition lab and recently I am responsible for the application of the 17025/2017 accreditation standard. | |||
 | Rigos George | Research Director | grigos@hcmr.gr +30 2291079494 | Fish pharmacokinetics & pathology | Anavissos | https://www.linkedin.com/in/george-rigos-929a231b | 0000-0002-3148-6213 | George Rigos | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | +30 2291079494 | Anavissos | Pharmacokinetics & residues Alternative preventive and therapeutic methods in aquaculture Environmental effects of antibacterial usage in aquaculture Interaction of fish nutrition and pathology Fish safety | 1985-1989 Technological Educational Institute of Messolonghi, Department of Aquaculture & Fisheries, Greece 1989-1990 Teaching Certificate, School of Pedagogical and Technological Education, ASPETE, Athens, Greece 1993-1995 Upgrading equivalent to BA (honours), University of Guelph, Guelph,Ontario, Canada 1995-1996 MSc Aquaculture with orientation in fish pathology; thesis title: The effect of antibiotic treatment on the establishment of asymptomatic infection in fish with Yersinia ruckeri. University of Guelph, Guelph, Ontario, Canada 2000-2003 PhD in fish pharmacology; thesis title: “the kinetic behaviour of oxytetracycline and oxolinic acid in Sparidae farmed fish”, University of Kingston, London, UK | |
 | Nengas Ioannis | Research Director | jnegas@hcmr.gr +30 22910 76495 | Aquaculture Nutrition | Anavissos | 255a041b | 0000-0001-5143-8027 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Anavissos | Aquaculture Nutrition Feeding management Aquafeed Technology | 1991 - PhD in Fish Nutrition. Use of ingredients of plant and animal origin in feeds for aquaculture species 1987 - BSc (hons) in Fisheries Science. University South West. UK | My education includes a PhD in fish nutrition from University South West, UK and a BSc (hons) n Fishery Science from Plymouth Polytechnic, UK . I am currently a Research Director at the Hellenic Centre for Marine Research, in Greece, having served as senior researcher for over twenty five years. Among my research interests are the evaluation of the nutritional quality of feed ingredients and supplements, nutritional requirements, formulations of practical diets, effect of nutrition on growth, quality and health of aquaculture fish species. I have participated in numerous European Union and National research projects, contributed in Fish nutrition books and produced over 50 publications in peer reviewed journals. Finally, I have consulted for the aquaculture industry for different species at a global level. | ||
 | Kotzamanis Ioannis (Yannis) | Research Director | jokotz@hcmr.gr | https://www.linkedin.com/in/yannis-kotzamanis-0ab43814 | 0000-0001-8567-2444 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | • Fish nutrition and nutriomics • Evaluation of fish feed ingredients and supplements • Nutritional requirements • Aquafeed formulation | My main research interests involve (a) the evaluation of the nutritional quality and effects of novel feed ingredients, supplements and bioactive compounds on growth performance, digestibility, quality and health of reared fish larvae, juveniles and adults, (b) the assessment of nutritional requirements and formulation of feeds of cultured fish and new candidate species, and (c) I have recently focused to investigation of the molecular and physiological mechanisms, which underlie, control and regulate fish appetite, growth, fat deposition and disease resistance using novel techniques from the field of proteomics and metabolomics. I am involved in various Scientific and Professional Committees and Working Groups. I have participated in several EU projects and coordinated several Greek national projects. I have installed in IMBBC an accredited laboratory by the Hellenic Laboratory Accreditation System according to the international standard ISO / IEC 17025: 2005, (ESYD -No. 1064) and have a close cooperation with the Greek and foreigner aquaculture industry for more than 20 years. | ||||||
 | Kasapidis Panagiotis | Research Director | kasapidi@hcmr.gr +30 2810337718 | Main Building | https://orcid.org/0000-0002-1538-0320 | X-9191-2018 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 018 | Main Building | Population Genetics and Phylogeography DNA metabarcoding Conservation Genetics Invasive genomics | 1996-2001 PhD in Evolution, Biology Department, University of Crete, Greece 1994-1996 MSc in Ecology, Biology Department, University of Crete, Greece 1990-1994 Degree in Biology, University of Athens, Greece | I am Senior Researcher at IMBBC-HCMR. I am an Evolutionary Biologist and my main research interests are population genetics and phylogeography, the development and standardization of DNA metabarcoding approaches to assess and monitor biodiversity of marine ecosystems, and genomics of invasive species. I have been involved in next generation sequencing (NGS), since 2009, operating the first NGS platform in Greece (454 GS FLX), and I have conducted experimental projects on DNA metabarcoding, bacterial diversity, population genomics, metagenomics, whole bacterial genome sequencing and transcriptomics. The development and operation of Research Infrastructures (RIs), related to the European RI EMBRC-ERIC, is another activity of mine. I am currently acting as project manager for the Greek RI “Centre for the study and sustainable exploitation of Marine Biological Resources (CMBR)” and for the H2020 project ASSEMBLE PLUS, and as liaison officer for transnational access (TA) projects related to EMBRC-ERIC (EMBRIC and ASSEMBLE Plus). | ||
 | Katharios Pantelis | Research Director | katharios@hcmr.gr 2810 337760 | Aquatic Pathobiology, microbiology, bacteriophages | Aqualabs | https://www.linkedin.com/in/pantelis-katharios-5827b13a | https://orcid.org/0000-0001-9905-5068 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Aqualabs | Fish Diseases Aquaculture Phage Therapy Parasitology | 2004 - PhD in Biology, Department of Biology, University of Patras, Greece 1997 - Master of Science in Aquatic Pathobiology, Institute of Aquaculture, University of Stirling, UK 1995 - Degree in Aquaculture and Fisheries, Technological Educational Institute of Messolonghi, Greece | I am a senior researcher at the Institute of Marine Biology, Biotechnology and Aquaculture of the Hellenic Centre for Marine Research. My main research topic is the study and control of diseases in aquaculture. I have dealt with almost the entire range of diseases affecting fish, infectious and non-infectious. The main objectives of my research are the pathologies affecting novel aquaculture fish species and the new emerging diseases. In recent years I have emphasized on the understanding of the molecular mechanisms that determine the virulence of pathogenic microorganisms and their interaction with the fish. In the field of disease control, I have worked extensively with the use of bacteriophages as a means of prevention and treatment and with the development of autogenous vaccines that has recently evolved to an independent service activity to the Greek aquaculture industry. I am the founder of Aquatic Biologicals, the first spinoff company of HCMR. Aquatic Biologicals is a Marine Biotechnology company with focus on the development of aquaculture health products like autogenous vaccines and phage therapy products. | ||
 | Dounas (retired) Costas | Research Director | kdounas@hcmr.gr +30 2810337814 | Marine Biology/Ecology/Technology | Main Building | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 114 | Main Building | Structure and dynamics of macrobenthic and benthopelagic assemblages Marine biodiversity (crustaceans, sponges, polychaets) Integrated Coastal Zone Management Marine Environmental Technology and Innovation Marine Protected Zones Artificial reefs research and applications Ocean literacy Environmental Impact Assessments Marine Pollution Monitoring Fishing gear effects | 1986 PhD in Marine Biology, Aristotelian University of Thessaloniki, Department of Biology, Doctoral thesis on marine pollution research in the North Aegean with emphasis on the quantitative and qualitative distribution of macrofaunal benthic assemblages related with natural and anthopogenic disturbance 1978 BSc in Biology, Aristotelian University of Thessaloniki, Department of Biology | Dr Costas Dounas is currently working as a Research Director at the Insitute of Marine Biology, Biotechnology & Aquaculture of the Hellenic Centre for Marine Research. Member of the National Council of Research and Development (1999-2004), the National Committee of Technology Transfer & Innovation (2001-2004) and the International Advisory Board of Coastal Research and Planning Institute, Claipeda University, Lithuania (2004-2005). Main fields of interest: marine biodiversity, benthic ecology, coastal zone management, MPAs, marine environmental technology, artificial reefs, EIAs, oil pollution and fishing gear effects. Co-ordination of more than 60 EU/National/regioanl funded research & development projects. More than 100 publications in Scientific Journals and Conferences Proceedings as well as 6 National/International Patents (Distinction award in the 1st National Patent Contest, 2002). | |||
 | Grigorakis Kriton | Research Director | kgrigo@hcmr.gr +30 22910 76490 | 0000-0002-3367-7160 | Web of Science: H-6321-2019 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Fish quality Sensory Quality Fish flavour Fish Freshness Aquaculture Ethics | Nutritional Quality of farmed and wild Fish. Impacts of diet, aquaculture management and fish life history on end product quality. Sensory quality of fish and its physicochemical basis. Fish freshness and factors affecting it Technical quality of fish Rapid, non-destructive methods for assessing fish quality & freshness Ethical issues in Aquaculture, Food Ethics | ||||||
 | Kotoulas Georgios | Research Director | kotoulas@hcmr.gr +30 2810337852 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Genomics, Population Genetics, Molecular Ecology, Marine Biodiversity | 1989 These de Doctorat (PhD), Institute of Evolution, University Montpellier II, Montpellier, France. Thesis title: Population Genetics and Biogeography of the common sole, Solea vulgaris (Actinopterygii, Pleuronectifomes, Soleidae). 1988 University Diploma, September 1988, Creufop, University Montpellier II. Title: “Chef de Project et d' Exploitation en Aquaculture" 1985 Diplome d'Etudes Approfondies (D.E.A.) Sciences de l' Evolution, September 1985: Institute of Evolution, University Montpellier II, Montpellier, France. Title: Genetic structure of Solea senegalensis and Solea aegyptiaca in the Atlantic and the Mediterranean. 1982 BSc from the Department of Biology, Aristotle University of Thessaloniki (Auth) | ||||||||
 | Magoulas Antonios | Research Director | magoulas@hcmr.gr +30 2810337801 | Marine Biology and Genetics | Main Building | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 52 002 | Main Building | Marine Biology, Population Genetics, Marine Genomics, Biotechnology | 1990 Ph.D. in Marine and Population Biology, University of Crete, Greece 1980 BSc in Biology, University of Athens, Greece | HCMR Director and President of the Board of Directors. Director of Research at the Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC) of HCMR. Former Director of IMBBC (2013 - 2018) and vice president of the Board of Directors of HCMR (2015-2018), former Director of the Institute of Marine Biology and Genetics (2005 -2012), for the founding of which I have played a pivotal role. Member of the Regional Council for Research and Innovation of Crete (RCRI-C) (since Jan 2017). Participation in more than 60 RTD projects, in half of which was Scientific Responsible of Coordinator. Scientific Responsible of the European (FP7, Capacities, REGPOT) emerging excellence project “Supporting research potential for marine biodiversity and genomics in the Eastern Mediterranean” (MARBIGEN), funded 3 M€. Coordinator of the “Centre for the Study and Sustainable Exploitation of Marine Biological Resources” (CMBR), which is the Greek node of EMBRC-ERIC and part of the Greek national roadmap for Research Infrastructures, funded 4 M€. H index = 32 (Scopus) - 38 (Google Scholar). More than 90 publications in international peer-reviewed journals, more than 2700 (Scopus) - 4300 (Google Scholar) citations. | |||
 | Papandroulakis Nikos | Research Director | npap@hcmr.gr 2810337733 | Aquaculture Production Technologies | Aqualabs | https://www.linkedin.com/in/nikos-papandroulakis-14754934 | orcid.org/0000-0002-7109-7132 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Aqualabs | Rearing technologies, precision aquaculture, climate change, circular economy, European sea bass, gilthead sea bream, meagre, greater amberjack, | 2000 - Ph.D., Marine Biology, University of Crete, Greece 1988 - M.Sc., in Theoretical Physics, University of Crete, Greece 1986 - B.Sc., Physics, University of Crete, Greece | Rearing technologies (hatchery - on growing cages) aiming at precision aquaculture. Species of interest: European sea bass, gilthead sea bream, meagre, greater amberjack Objective: Determine the rearing parameters for optimal performance of the farmed species, adapted to the challenges of climate change and the circular economy. Behavior studies and determination of stress conditions, development of husbandry welfare indicators and methods of early prediction. Development of human free operational and monitoring methods | ||
 | Polymenakou Paraskevi | Research Director | polymen@hcmr.gr +30 2810 337855 | Environmental Microbiology/ Extreme Environments | Main Building | https://www.linkedin.com/in/paraskevi-polymenakou-6135b29 | 0009-0008-2046-3930 | AAW-5313-2020 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 155 | Main Building | Environmental Microbiology of Marine Hydrothermal and Volcanic Systems Scientific Ocean Drilling (IODP) Genomic and Metagenomic Bioprospecting for Marine Biotechnology Autonomous Marine Robotic Technologies Microbial Diversity, Ecology and Ecosystem Functioning Marine Genomic Observatories and Long-Term Monitoring International Biodiversity Policy: Nagoya Protocol and BBNJ Agreement | 2005 - Ph.D. Thesis in Environmental Organic Chemistry and Marine Microbiology, Department of Chemistry, University of Crete, Greece Subject: “Environmental control on microbial community composition in different sediments from the Eastern Mediterranean Sea: evaluation of the associated molecular markers” Supervisor: Prof. E.G. Stephanou 2000 - Master Thesis in Environmental Science and Engineering, Department of Chemistry, University of Crete, Greece Subject: “Kinetics of phenol degradation using a new soil bacterium isolate” Supervisor: Prof. E.G. Stephanou 1998 - Bachelor of Science in Biology, University of Crete, Greece Diploma subject: “Construction of a chimeric purine transporter in Aspergillus nidulans” Supervisors: Prof. N.J. Panopoulos, Dr. G. Diallinas | Paraskevi N. Polymenakou is Research Director in Environmental Microbiology with specialization in extreme environments. Her research integrates geomicrobiology, molecular microbial ecology, marine genomics and autonomous ocean observations to uncover how microbial life responds to and interacts with active Earth systems, particularly submarine volcanoes. She is currently the PI of the HFRI Project BIORESIST, and two HORIZON Projects (MERLIN and NEXTMARINE). She has contributed to research on the microbiology of the deep subsurface through her participation in the groundbreaking IODP Exp. 398. Her expertise extends to bioprospecting genomic and metagenomic data from volcanic systems. She is the Head of the Environmental Microbiology Lab at IMBBC and the Scientific Responsible of the IMBBC microbial strain collection from extreme environments. She has been involved as Coordinator, PI or Collaborator in 27 international and national research projects and she has been the Chief Scientist of many Oceanographic Expeditions. Her research work has been presented in 53 publications in peer-reviewed international journals and in 18 Book Chapters. The cumulative journal impact factor is 349.9 (ISI metrics; h-index: 26). Her publications have received 3110 citations (06/07/2026). |
 | Sarropoulou Elena | Research Director | sarris@hcmr.gr +30 2810 337753 | Functional & Epi-Genomics | Main Building | 0000-0003-1824-9405 | 0000-0003-1824-9405 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 053 | Main Building | -Epigenetics during reproduction, immune response and development -Functional Genomics comprising differential gene expression and gene regulation -Comparative genomics to study gene evolution | My research activities are around teleost development, stress and disease response, as well as reproduction. Therefore, I apply available state-of-the-art technologies to tackle functional and comparative genomics as well as epigenetic mechanisms in commercially important Mediterranean aquaculture species. I participate in several large, EU-funded projects mainly involved as an expert in genetics and functional genomics. I have a fine background in bioinformatics enabling me to perform analyses of sequencing data, genotyping data, expression data as well as protein data. | ||
 | Chatzifotis Stavros | Research Director | stavros@hcmr.gr +30 337873 | Aquaculture Nutrition | Aqualabs | 0000-0002-1270-9725 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Aqualabs | Aquaculture Nutrition. Research interests include the determination of nutrient requirements of fish and nutritional biochemistry as well as feeding behavior and diet selection by fish of commercial interest. | |||||
 | Koulouri Panayota (Yolanda) | Research Director | yol72@hcmr.gr +30 2810 337716 | Marine Ecology, Ocean Literacy | Main Building | https://www.linkedin.com/in/yolanda-panayota-koulouri-67556b4a | https://orcid.org/0000-0002-3418-7980 | 276621110129 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Main Building | Marine biodiversity (Crustacea, Mollusca) Benthic ecology Integrated Coastal Zone Management (ICZM) Ocean literacy (OL) Benthic Boundary Layer (BBL) ecology Fishing gear effects Recreational diving parks Artificial Reefs Environmental Impact Assessments (EIAs) Marine pollution monitoring | 1999-2005 PhD in Marine Biology, University of Crete (Greece), Department of Biology, Doctoral thesis on Bottom fishing gear effects on BBL macrofauna 1996-1999 MSc in Marine Biology, University of Crete (Greece), Department of Biology, thesis on ecology of macrobenthic molluscs 1992-1996 BSc in Biology, University of Patras (Greece), Department of Biology, thesis on taxonomy of plants (Compositae) | Dr Yolanda Koulouri is a marine biologist currently working as a Research Director at the Institute of Marine Biology, Biotechnology & Aquaculture (IMBBC) of the Hellenic Centre for Marine Research (HCMR) in Crete. She has an adequate experience working on funded research projects concerning marine biodiversity, benthic ecology, coastal zone management, development of recreational diving parks by using artificial reefs and marine pollution monitoring. She is the author of about 80 publications in Scientific Journals, Books, special editions and more than 80 announcements in Scientific Conferences. She is a member of the European Marine Science Educators Association (EMSEA, member of the Legal Board since 2025). She is also a member (co-chair, 2021-2024) of the Expert Working Group on Ocean Literacy of the European Global Ocean Observing System (EuroGOOS) and representative for HCMR of EU4Ocean Coalition. She has been a member of the Scientific Council of IMBBC (2020-2024). She is CEO of the HCMR spin-off company of Artificial Reef Innovative Applications (since 2022). Lately, she has become the national representative for Ocean Literacy at IOC-UNESCO. | |
 | Kogianou Dimitra | Research Scientist | dkogiannou@hcmr.gr 2291076459 | Food quality and safety | Anavissos | https://www.linkedin.com/in/dimitra-kogiannou-84b51994/?originalSubdomain=gr | 0000-0001-5503-3828 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Γ9 | Anavissos | Fish biochemistry and quality / Food safety | 2002-2009 Biology 2009-2011 MSc Nutrition and Public Health 2012-2016 PhD Food chemistry/Biochemistry | ||
 | Fakriadis Ioannis | Research Scientist | fakriadis@hcmr.gr +302810337875 | Fish Reproduction | Aqualabs | linkedin.com/in/yannis-fakriadis-535a597a | 0000-0001-7180-3642 | AAV-1558-2020 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Aqualabs | fish reproduction, aquaculture, gamete quality, fish physiology - endocrinology | After completing my postgraduate studies at the MSc level (2006), I have worked in both the private and public sector, in the fields of: a) fish reproduction and physiology, b) selective breeding, c) assisted reproduction to alleviate reproductive dysfunctions, d) gamete quality through automated analyses. More recently, parentage analysis and reproductive behavior has been added to my research interests. In addition to my involvement with the main species of Mediterranean fish farming, such as gilthead sea bream (Sparus aurata) and European sea bass (Dicentrarchus labrax), I have also dealt with new/emerging species for aquaculture production, such as the greater amberjack (Seriola dumerili), meagre (Argyrosomus regius) and wreckfish (Polyprion americanus). I have gained valuable experience with my involvement in major research projects either European (DIVERSIFY, NewTechAqua, BestBrood, etc) or national funded (MAGIATIKO, MOUNT, etc), or when providing consulting services to companies in the aquaculture industry. | ||
 | Gerovasileiou Vasilis | Collaborative University Faculty | vgerovas@hcmr.gr | Marine Biology | https://www.linkedin.com/in/vasilis-gerovasileiou-38347112b | 0000-0002-9143-7480 | Marine biodiversity, benthic ecology, marine caves, dark habitats, benthic invertebrates, sponges, corals, non-indigenous species, bioconstructions, marine conservation, citizen science, scientific diving, biodiversity informatics | My research focuses on marine biodiversity and benthic ecology, with special emphasis on benthic invertebrates, dark habitats (marine caves and deep-sea habitats), and non-indigenous species. I have been also involved in the development of biodiversity databases, citizen science initiatives and methods for underwater biological research with SCUBA diving. | ||||||
 | Sterioti Aspasia | Principal Researcher | aspasia@hcmr.gr +30 2810337886 | Fisheries & Aquaculture/ Marine Aquariology | Creta Aquarium | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Creta Aquarium | Aquaculture Mesocosms larval rearing Food chains, Life food production Fish coloration - Pigment cells Marine Aquariology Endangered species protection Allochthonus species life cycle Sea turtle rehabilisation & release | 1988 - Degree in Aquaculture & Fisheries, Technological Educational Institute (TEI) of Mesolonghi, Greece. Thesis title: Synthesis of bibliography on glass-ell ecology. (130 pp.). 1996 - B.Sc. Degree in Biology. University of Crete, Department of Biology, Greece. 1999 - M. Sc. Degree in Biology (Marine and Environmental Sciences). University of Crete, Department of Biology, Greece (under Professor Maroudio Kentouri). Thesis title: The effect of initial concentration on the population growth rate of marine rotifer Synchaeta sp. under natural conditions in Crete. (80 pp.). 2005 - Ph.D. Degree in Biology (Marine Sciences). University of Crete, Department of Biology, Greece (under Professor Maroudio Kentouri). Dissertation title: Study of chromatophores of red porgy (Pagrus pagrus). (181 pp.). | Dr. Sterioti is a senior researcher at the Institute Marine Biology, Biotechnology and Aquaculture Institute of the Hellenic Center for Marine Research. Her research interests are focused on the study of marine organisms with economical and/or ecological interest for the aquaculture and marine aquarium. Dr. Sterioti's research field may be summarized in (a) the collection and identification of marine fish larvae/fry, (b) the marine hatchery techniques mainly Extensive (Mesocosm), Semi-extensive (Mesocosm) and Intensive larval rearing, the study of fish stage development, the Food chains and Life food production, (c) the coloration of marine fish, the histological studies (skin structure) by both light and electron microscopy, the morphology and physiology of skin chromatophores (pigment cells). Her research field also includes (d) the alive stock handling and study of Mediterranean and Indo-Pacific tropical fish and invertebrates, including the jellyfish and seahorse to the elasmobranch (sharks Carcharias taurus, Carcharhinus plumbeus, rays, skates) and allochthonus Lessepsian species, the water quality amelioration, and, finally, (e) the protection of wild life, injured marine turtles' care and rehabilitation, the conservation and reproduction of endangered species. | ||||
 | Cotou Efthimia (Efi) | Principal Researcher | ecotou@hcmr.gr 0030 2291076492 | Biomarkers & Bioassays | Anavissos | https://orcid.org/0000-0003-1480-8257 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Anavissos | Biomarkers in Aquatic and Nutritional Toxicology Biomarkers in Aquaculture Developmental, nutritional, prognostic biomarkers Biomarkers of antioxidant, detoxify and digestive systems Susceptible and pollution biomarkers Living cells culture, in vitro bioassays In vivo, in situ bioassays Bioactivity, biotoxicity of functional aquafeeds, ingredients, additives Fish, shellfish, invertebrate physiology Aquaculture and Environment Interaction | I am a holder of a PhD in Aquatic Toxicology and Environmental Sanitation (University of Ghent, Belgium, funded by the EEC) and a BSc in Biology (National and Kapodistrian University of Athens, Greece). My research focus on identification/selection of ideal biomarkers and development/optimization/validation of bioassays to detect anthropogenic environmental impacts on aquatic organisms and to evaluate the status of development, health and survival of marine farmed fish and shellfish affected by rearing systems, nutritional manipulations, disease treatments and exposure to other stressors during production. I have been involved in many EU and National research projects related to my research interests. I have established the Ecotoxicology Lab for Biological markers and assays at the Institute of Oceanography of HCMR and the Toxicology and Biomarkers Lab at the IMBBC of HCMR, where I am the Scientific responsible. I have been evaluator for the establishment of International Standardized guidelines for toxicity bioassays (ISO) by the Hellenic Organization Standardization (ELOT) and initiator for the production of National legislation (FEK 455/4-4-2000) for licensing chemical dispersants to combat oil pollution in seawaters based on toxicity bioassays. | ||||
 | Mandalakis Manolis | Principal Researcher | mandalakis@hcmr.gr 2810337855 | Bioanalysis and Marine Biotechnology | Main Building | https://www.linkedin.com/in/manolis-mandalakis-865a5a55 | 0000-0002-7469-4290 | M-4606-2019 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 155 | Main Building | Bioanalysis, Biomolecules, Biotoxins, Metabolites, Bioactive compounds, Organic pollutants, Analytical chemistry, Mass spectrometry, Chromatography, Biotechnology, Marine biological resources, Bacteria, Sponges, Fish, Marine products, Valorisation | 1998-2002 Ph.D. Thesis in Environmental and Analytical Chemistry, University of Crete, Department of Chemistry, Heraklion, Greece Title of the doctoral dissertation: “Study of the fate of polychlorinated biphenyls in the atmosphere of Eastern Mediterranean” 1993-1998 B.Sc. diploma in Chemistry, School of Natural Sciences, University of Ioannina, Department of Chemistry, Ioannina, Greece (Grade: 7.32/10) B.Sc. diploma thesis in Environmental Chemistry, Title: “Removal of chromate and phosphate from sewage wastes by physicochemical processes” | My research focuses on Bioanalysis and Marine Biotechnology, aiming to develop innovative strategies for the sustainable valorization of marine biological resources, including biomass, metabolites, biomolecules and bioactive compounds. I am also interested in harnessing the potential of marine organisms for environmentally beneficial applications, particularly bioremediation and the biodegradation of organic pollutants. To achieve my objectives, I employ bioanalysis as my principal research tool, developing and applying advanced analytical methodologies for the detection, identification and accurate quantification of small molecules in marine organisms. I also develop analytical methods that enable the measurement of target biomolecules in a more efficient, robust and cost-effective manner. In parallel, I investigate metabolites and other small biomolecules that regulate the physiological state of marine organisms or provide valuable insights into species identity, biological activity, toxicity and responses to environmental stress. By integrating analytical chemistry with marine biology, my research aims to advance our understanding of marine organisms while promoting their sustainable exploitation for environmental and biotechnological applications. |
 | Henry Morgane | Principal Researcher | morgane@hcmr.gr 2291076493 | Fish Health | Anavissos | https://www.linkedin.com/in/morgane-henry-323b0a1b | 0000-0002-8911-6362 | G9912-2011 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Anavissos | Fish Immunology Fish resistance to diseases Bacterial and parasitic challenges Dietary insects Immunostimulants Dietary supplementation Dietary requirements for optimal immune status | 1994 - BSc Oceanography at the Université de Bretagne Occidentale (Brest, France). 1995 - MSc Marine Biotechnology at the Université de Marseille-Luminy (Marseille, France). ΔΟΑΤΑΠ (3-124- 14/09/2005). 2000 - Doctor of Philosophy in Zoology (2000), University of Aberdeen, Scoland, UK (under Professor Christopher Secombes). Dissertation title: Antibacterial peptides in rainbow trout, Onchorhynchus mykiss. (224 pp.). | Dr. Morgane Henry has long experience in the immunology of various fish and shellfish species. She acquired her PhD from the University of Aberdeen (Scotland, UK) studying antibacterial peptides in rainbow trout. After a post-doc in human allergy at King's College (London, UK), she joined HCMR (Athens, Greece) in 2000. She has participated in many EU and national projects studying the effects of nutrition (insects, immunostimulants, probiotics, minerals, fishmeal and fish oil replacement...), stress, or pollution on the fish immune system and on the fish resistance to diseases. She has also studied the effects of diseases commonly affecting Mediterranean aquaculture fish species on their immune system. In recent years, she has been involved in many projects investigating the use of dietary insects as fishmeal and/or fish oil replacements and their effects on fish health. | |
 | Pafilis Evangelos | Principal Researcher | pafilis@hcmr.gr +30 2810337748 | Bioinformatics Biodiversity Inform/cs Data Science | Main Building | 0000-0001-5079-0125 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Main Building | Bioinformatics, Biodiversity Informatics, Data Science, Text Mining, Literature, Data Integration, Metabarcoding, HPC, microbiology | 2004 - 2009 PhD Bioinformatics (Magna cum Laude) EMBL (European Molecular Biology Laboratory) – University of Heidelberg, Germany (joint PhD) Thesis: Web-based data integration and text mining techniques to accelerate biomedical research Supervisor: Dr. Reinhard Schneider, University advisor: Prof. Roland Eils Funding: EMBL PhD Fellowship 2002 - 2003 MRes Bioinformatics (Distinction) University of Glasgow, Scotland Thesis: Visualisation Mechanisms supporting Genotype Analysis Supervisor: Dr. Ela Hunt, Dept of Computing Science 1998 - 2002 BSc Biology, 1998 – 2002, University of Crete, Greece | Evangelos Pafilis (M) is a Researcher C in Bioinformatics and Biodiversity informatics with research focusing on the text mining of large corpora, for organism, process, environment and other biological entity mentions. His main aim is to extract knowledge and propose innovative hypotheses. This is in relevance to a broad spectrum of biological application ranging from biomedicine to molecular ecology and biodiversity. In addition, he co-coordinates the IMBBC's High Performance Computing (HPC) facility. Author of 27 Scientific Articles, 460 citations, H-Index = 11; Source = SCOPUS (9th May 2020). | |||
 | Papadakis Ioannis | Principal Researcher | papad@hcmr.gr +30 2810 337876 | Aquaculture, feeding behavior, | Aqualabs | https://orcid.org/0000-0001-9822-2346 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | +30 2810337876 | Aqualabs | Development of feeding protocols, feeding behavior of larvae and fish, ontogeny, and plasticity of the organs associated with feeding behavior of marine species in aquaculture (visual system, digestive system). | 2011 - Ph.D. Environmental Biology, University of Crete, Greece Dissertation Title: «A comparative study on the ontogenesis and plasticity of the systems associated with feeding behaviour, (digestive system, eye, olfactory and taste system) of the Dentex Dendex dendex and the Meagre Argyrosomus regius reared with the mesocosm technology» 2004 - M.Sc. Environmental Biology, University of Crete, Greece Dissertation Title: «Biological adaptation and dietary behaviour of great amberjacks (Seriola dumerilii Risso 1810) fed from moist to dry pellets» 1996 - B.Sc. University of Thessaly, Department of Agriculture, Crop and Animal Production: «The effect of different levels of protein and nitrogen-free extracts on the growth performance of sea bream Sparus aurata» | My research interests are focused on the study of the behavioral activity of farmed species in aquaculture. Specifically, my main research interest focuses on the ontogeny and plasticity of the organs associated with the feeding behavior of the marine species in aquaculture. Furthermore, my interests lay on the study of the factors that influence the development of these organs in the early stages of development. The aftermath of this procedure is performed in the evaluation and optimization of the feeding protocols during the larval rearing procedure. The abovementioned procedure is based on the synchronization of ontogeny and the configuration of the organs and systems of fish larvae that are associated with feeding behavior (digestive system, vision system, taste, and smell), with the feeding protocol and larval rearing conditions. Additionally, I study the behavior of farmed fish under the influence of different endogenous or exogenous factors in order to succeed in the development of new farming technologies aimed to increase the welfare and production indexes. | ||
 | Manousaki Tereza | Principal Researcher | tereza@hcmr.gr 302810337717 | Main Building | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Main Building | Evolutionary Biology, Molecular Ecology, Genomics, Bioinformatics, Aquaculture Genomics, Biodiversity Genomics | 2005 - B.Sc. Biology, University of Crete 2008 - M.Sc. Environmental Biology, University of Crete 2013 - Ph. D. Evolutionary Biology and Zoology, University of Konstanz | ||||||
 | Dailianis Thanos | Principal Researcher | thanosd@hcmr.gr +30 2810 337750 | Marine Biology | Main Building | 0000-0002-4102-9331 | G-9145-2011 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 049 | Main Building | Biology of Marine Invertebrates Marine Biodiversity and Ecology Scientific Diving | 1998 - BSc in Biology - School of Biology, Aristotle University of Thessaloniki (AUTH) 2003 - MSc "Coastal Areas Management" - University of the Aegean, School of the Environment, Department of Marine Sciences 2011 - PhD in Biology - School of Biology, Aristotle University of Thessaloniki (AUTH) | Dr. Thanos Dailianis is a principal researcher at IMBBC-HCMR focusing on the biology of marine invertebrates through an integrative approach comprising field ecology, taxonomy, genetic diversity, physiology and biotechnological applications. This is combined with a general interest in marine biodiversity and conservation. Currently coordinator of MACCIMO project, attempting a multi-level assessment of climate change impact on sessile and low-motility marine invertebrates. Principal investigator for SponBIODIV Biodiversa+, addressing knowledge gaps in sponge diversity patterns in the Atlantic and the Mediterranean. PI for SPINAQUA, investigating the potential of sponge cultivation in proximity to fish aquaculture for bioremediation and bioproduction. Member of the management committee of three ongoing European COST actions: MAF-World, on the research and conservation of Marine Animal Forests; Ocean4Biotech, on the development of marine biotechnology research, and SEA-Unicorn, unifying approaches to marine connectivity for resource management. An avid technical diver, with 1500+ logged dives for research in the Mediterranean and the Red Sea and coordinator of scientific expeditions. Expert in underwater photography, for scientific documentation and dissemination. | |
| Sterioti Aspasia | Principal Researcher | aspasia@hcmr.gr +30 2810337886 | Fisheries & Aquaculture/ Marine Aquariology | Creta Aquarium | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Creta Aquarium | Aquaculture Mesocosms larval rearing Food chains, Life food production Fish coloration - Pigment cells Marine Aquariology Endangered species protection Allochthonus species life cycle Sea turtle rehabilisation & release | 1988 - Degree in Aquaculture & Fisheries, Technological Educational Institute (TEI) of Mesolonghi, Greece. Thesis title: Synthesis of bibliography on glass-ell ecology. (130 pp.). 1996 - B.Sc. Degree in Biology. University of Crete, Department of Biology, Greece. 1999 - M. Sc. Degree in Biology (Marine and Environmental Sciences). University of Crete, Department of Biology, Greece (under Professor Maroudio Kentouri). Thesis title: The effect of initial concentration on the population growth rate of marine rotifer Synchaeta sp. under natural conditions in Crete. (80 pp.). 2005 - Ph.D. Degree in Biology (Marine Sciences). University of Crete, Department of Biology, Greece (under Professor Maroudio Kentouri). Dissertation title: Study of chromatophores of red porgy (Pagrus pagrus). (181 pp.). | Dr. Sterioti is a senior researcher at the Institute Marine Biology, Biotechnology and Aquaculture Institute of the Hellenic Center for Marine Research. Her research interests are focused on the study of marine organisms with economical and/or ecological interest for the aquaculture and marine aquarium. Dr. Sterioti's research field may be summarized in (a) the collection and identification of marine fish larvae/fry, (b) the marine hatchery techniques mainly Extensive (Mesocosm), Semi-extensive (Mesocosm) and Intensive larval rearing, the study of fish stage development, the Food chains and Life food production, (c) the coloration of marine fish, the histological studies (skin structure) by both light and electron microscopy, the morphology and physiology of skin chromatophores (pigment cells). Her research field also includes (d) the alive stock handling and study of Mediterranean and Indo-Pacific tropical fish and invertebrates, including the jellyfish and seahorse to the elasmobranch (sharks Carcharias taurus, Carcharhinus plumbeus, rays, skates) and allochthonus Lessepsian species, the water quality amelioration, and, finally, (e) the protection of wild life, injured marine turtles' care and rehabilitation, the conservation and reproduction of endangered species. | ||||
| Cotou Efthimia (Efi) | Principal Researcher | ecotou@hcmr.gr 0030 2291076492 | Biomarkers & Bioassays | Anavissos | https://orcid.org/0000-0003-1480-8257 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Anavissos | Biomarkers in Aquatic and Nutritional Toxicology Biomarkers in Aquaculture Developmental, nutritional, prognostic biomarkers Biomarkers of antioxidant, detoxify and digestive systems Susceptible and pollution biomarkers Living cells culture, in vitro bioassays In vivo, in situ bioassays Bioactivity, biotoxicity of functional aquafeeds, ingredients, additives Fish, shellfish, invertebrate physiology Aquaculture and Environment Interaction | I am a holder of a PhD in Aquatic Toxicology and Environmental Sanitation (University of Ghent, Belgium, funded by the EEC) and a BSc in Biology (National and Kapodistrian University of Athens, Greece). My research focus on identification/selection of ideal biomarkers and development/optimization/validation of bioassays to detect anthropogenic environmental impacts on aquatic organisms and to evaluate the status of development, health and survival of marine farmed fish and shellfish affected by rearing systems, nutritional manipulations, disease treatments and exposure to other stressors during production. I have been involved in many EU and National research projects related to my research interests. I have established the Ecotoxicology Lab for Biological markers and assays at the Institute of Oceanography of HCMR and the Toxicology and Biomarkers Lab at the IMBBC of HCMR, where I am the Scientific responsible. I have been evaluator for the establishment of International Standardized guidelines for toxicity bioassays (ISO) by the Hellenic Organization Standardization (ELOT) and initiator for the production of National legislation (FEK 455/4-4-2000) for licensing chemical dispersants to combat oil pollution in seawaters based on toxicity bioassays. | ||||
| Mandalakis Manolis | Principal Researcher | mandalakis@hcmr.gr 2810337855 | Bioanalysis and Marine Biotechnology | Main Building | https://www.linkedin.com/in/manolis-mandalakis-865a5a55 | 0000-0002-7469-4290 | M-4606-2019 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 155 | Main Building | Bioanalysis, Biomolecules, Biotoxins, Metabolites, Bioactive compounds, Organic pollutants, Analytical chemistry, Mass spectrometry, Chromatography, Biotechnology, Marine biological resources, Bacteria, Sponges, Fish, Marine products, Valorisation | 1998-2002 Ph.D. Thesis in Environmental and Analytical Chemistry, University of Crete, Department of Chemistry, Heraklion, Greece Title of the doctoral dissertation: “Study of the fate of polychlorinated biphenyls in the atmosphere of Eastern Mediterranean” 1993-1998 B.Sc. diploma in Chemistry, School of Natural Sciences, University of Ioannina, Department of Chemistry, Ioannina, Greece (Grade: 7.32/10) B.Sc. diploma thesis in Environmental Chemistry, Title: “Removal of chromate and phosphate from sewage wastes by physicochemical processes” | My research focuses on Bioanalysis and Marine Biotechnology, aiming to develop innovative strategies for the sustainable valorization of marine biological resources, including biomass, metabolites, biomolecules and bioactive compounds. I am also interested in harnessing the potential of marine organisms for environmentally beneficial applications, particularly bioremediation and the biodegradation of organic pollutants. To achieve my objectives, I employ bioanalysis as my principal research tool, developing and applying advanced analytical methodologies for the detection, identification and accurate quantification of small molecules in marine organisms. I also develop analytical methods that enable the measurement of target biomolecules in a more efficient, robust and cost-effective manner. In parallel, I investigate metabolites and other small biomolecules that regulate the physiological state of marine organisms or provide valuable insights into species identity, biological activity, toxicity and responses to environmental stress. By integrating analytical chemistry with marine biology, my research aims to advance our understanding of marine organisms while promoting their sustainable exploitation for environmental and biotechnological applications. |
| Henry Morgane | Principal Researcher | morgane@hcmr.gr 2291076493 | Fish Health | Anavissos | https://www.linkedin.com/in/morgane-henry-323b0a1b | 0000-0002-8911-6362 | G9912-2011 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Anavissos | Fish Immunology Fish resistance to diseases Bacterial and parasitic challenges Dietary insects Immunostimulants Dietary supplementation Dietary requirements for optimal immune status | 1994 - BSc Oceanography at the Université de Bretagne Occidentale (Brest, France). 1995 - MSc Marine Biotechnology at the Université de Marseille-Luminy (Marseille, France). ΔΟΑΤΑΠ (3-124- 14/09/2005). 2000 - Doctor of Philosophy in Zoology (2000), University of Aberdeen, Scoland, UK (under Professor Christopher Secombes). Dissertation title: Antibacterial peptides in rainbow trout, Onchorhynchus mykiss. (224 pp.). | Dr. Morgane Henry has long experience in the immunology of various fish and shellfish species. She acquired her PhD from the University of Aberdeen (Scotland, UK) studying antibacterial peptides in rainbow trout. After a post-doc in human allergy at King's College (London, UK), she joined HCMR (Athens, Greece) in 2000. She has participated in many EU and national projects studying the effects of nutrition (insects, immunostimulants, probiotics, minerals, fishmeal and fish oil replacement...), stress, or pollution on the fish immune system and on the fish resistance to diseases. She has also studied the effects of diseases commonly affecting Mediterranean aquaculture fish species on their immune system. In recent years, she has been involved in many projects investigating the use of dietary insects as fishmeal and/or fish oil replacements and their effects on fish health. | |
| Pafilis Evangelos | Principal Researcher | pafilis@hcmr.gr +30 2810337748 | Bioinformatics Biodiversity Inform/cs Data Science | Main Building | 0000-0001-5079-0125 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Main Building | Bioinformatics, Biodiversity Informatics, Data Science, Text Mining, Literature, Data Integration, Metabarcoding, HPC, microbiology | 2004 - 2009 PhD Bioinformatics (Magna cum Laude) EMBL (European Molecular Biology Laboratory) – University of Heidelberg, Germany (joint PhD) Thesis: Web-based data integration and text mining techniques to accelerate biomedical research Supervisor: Dr. Reinhard Schneider, University advisor: Prof. Roland Eils Funding: EMBL PhD Fellowship 2002 - 2003 MRes Bioinformatics (Distinction) University of Glasgow, Scotland Thesis: Visualisation Mechanisms supporting Genotype Analysis Supervisor: Dr. Ela Hunt, Dept of Computing Science 1998 - 2002 BSc Biology, 1998 – 2002, University of Crete, Greece | Evangelos Pafilis (M) is a Researcher C in Bioinformatics and Biodiversity informatics with research focusing on the text mining of large corpora, for organism, process, environment and other biological entity mentions. His main aim is to extract knowledge and propose innovative hypotheses. This is in relevance to a broad spectrum of biological application ranging from biomedicine to molecular ecology and biodiversity. In addition, he co-coordinates the IMBBC's High Performance Computing (HPC) facility. Author of 27 Scientific Articles, 460 citations, H-Index = 11; Source = SCOPUS (9th May 2020). | |||
| Papadakis Ioannis | Principal Researcher | papad@hcmr.gr +30 2810 337876 | Aquaculture, feeding behavior, | Aqualabs | https://orcid.org/0000-0001-9822-2346 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | +30 2810337876 | Aqualabs | Development of feeding protocols, feeding behavior of larvae and fish, ontogeny, and plasticity of the organs associated with feeding behavior of marine species in aquaculture (visual system, digestive system). | 2011 - Ph.D. Environmental Biology, University of Crete, Greece Dissertation Title: «A comparative study on the ontogenesis and plasticity of the systems associated with feeding behaviour, (digestive system, eye, olfactory and taste system) of the Dentex Dendex dendex and the Meagre Argyrosomus regius reared with the mesocosm technology» 2004 - M.Sc. Environmental Biology, University of Crete, Greece Dissertation Title: «Biological adaptation and dietary behaviour of great amberjacks (Seriola dumerilii Risso 1810) fed from moist to dry pellets» 1996 - B.Sc. University of Thessaly, Department of Agriculture, Crop and Animal Production: «The effect of different levels of protein and nitrogen-free extracts on the growth performance of sea bream Sparus aurata» | My research interests are focused on the study of the behavioral activity of farmed species in aquaculture. Specifically, my main research interest focuses on the ontogeny and plasticity of the organs associated with the feeding behavior of the marine species in aquaculture. Furthermore, my interests lay on the study of the factors that influence the development of these organs in the early stages of development. The aftermath of this procedure is performed in the evaluation and optimization of the feeding protocols during the larval rearing procedure. The abovementioned procedure is based on the synchronization of ontogeny and the configuration of the organs and systems of fish larvae that are associated with feeding behavior (digestive system, vision system, taste, and smell), with the feeding protocol and larval rearing conditions. Additionally, I study the behavior of farmed fish under the influence of different endogenous or exogenous factors in order to succeed in the development of new farming technologies aimed to increase the welfare and production indexes. | ||
| Manousaki Tereza | Principal Researcher | tereza@hcmr.gr 302810337717 | Main Building | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Main Building | Evolutionary Biology, Molecular Ecology, Genomics, Bioinformatics, Aquaculture Genomics, Biodiversity Genomics | 2005 - B.Sc. Biology, University of Crete 2008 - M.Sc. Environmental Biology, University of Crete 2013 - Ph. D. Evolutionary Biology and Zoology, University of Konstanz | ||||||
| Dailianis Thanos | Principal Researcher | thanosd@hcmr.gr +30 2810 337750 | Marine Biology | Main Building | 0000-0002-4102-9331 | G-9145-2011 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 049 | Main Building | Biology of Marine Invertebrates Marine Biodiversity and Ecology Scientific Diving | 1998 - BSc in Biology - School of Biology, Aristotle University of Thessaloniki (AUTH) 2003 - MSc "Coastal Areas Management" - University of the Aegean, School of the Environment, Department of Marine Sciences 2011 - PhD in Biology - School of Biology, Aristotle University of Thessaloniki (AUTH) | Dr. Thanos Dailianis is a principal researcher at IMBBC-HCMR focusing on the biology of marine invertebrates through an integrative approach comprising field ecology, taxonomy, genetic diversity, physiology and biotechnological applications. This is combined with a general interest in marine biodiversity and conservation. Currently coordinator of MACCIMO project, attempting a multi-level assessment of climate change impact on sessile and low-motility marine invertebrates. Principal investigator for SponBIODIV Biodiversa+, addressing knowledge gaps in sponge diversity patterns in the Atlantic and the Mediterranean. PI for SPINAQUA, investigating the potential of sponge cultivation in proximity to fish aquaculture for bioremediation and bioproduction. Member of the management committee of three ongoing European COST actions: MAF-World, on the research and conservation of Marine Animal Forests; Ocean4Biotech, on the development of marine biotechnology research, and SEA-Unicorn, unifying approaches to marine connectivity for resource management. An avid technical diver, with 1500+ logged dives for research in the Mediterranean and the Red Sea and coordinator of scientific expeditions. Expert in underwater photography, for scientific documentation and dissemination. | |
 | Georgopoulou Dimitra | Research fellow | d.georgopoulou@hcmr.gr 2810337779 | Animal Movement, Theoretical biology | https://orcid.org/0000-0003-1096-0585 | Movement biology, Computational biology, Computer vision, Infectious diseases | Dimitra Georgopoulou is currently studying the movement behaviour of aquaculture fish species (e.g. European seabass, Gilthead seabream and Greater amberjack) in recirculating aquaculture systems (RAS) and marine cages, using computer vision techniques. | |||||||
 | Chatzinikolaou Eva | Research fellow | evachatz@hcmr.gr +30 2810337741 | Marine Biology | Main Building | https://www.linkedin.com/in/eva-chatzinikolaou-93090860 | 0000-0002-7171-5105 | G-9439-2011 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 038 | Main Building | Climate change, Ocean acidification, micro-CT tomography, Geometric Morphometrics, Marine biodiversity, Intertidal ecology, Marine pollution, Citizen Science | 2002 - 2006 PhD in Marine Biology, University of Wales, Bangor United Kingdom), School of Ocean Sciences, Faculty of Sciences and Engineering. Doctoral Thesis on "The ecology and growth of the netted dogwhelk Nassarius reticulatus (Gastropoda: Nassariidae)" 2000 - 2001 MSc in Marine Environmental Protection, University of Wales, Bangor (United Kingdom), School of Ocean Sciences, Faculty of Sciences and Engineering. Thesis on "Lethal and sublethal effects of insecticides on marine invertebrates" 1995 - 2000 BSc in Biology, National and Kapodistrian University of Athens, Department of Biology, School of Sciences. Thesis on "Culture methods of the microalgae Isochrysis galbana and Dunaliella tertiolecta and toxic impact of cryoprotectants; Testing of different cryopreservation conditions and effect on the lipid content of microalgae" | Dr Eva Chatzinikolaou is a research fellow in the Hellenic Centre for Marine Research - Institute of Marine Biology, Biotechnology and Aquaculture. Her research focus on climate change, ocean acidification, micro-CT tomography, marine biodiversity and intertidal ecology. During her PhD she studied population dynamics, ageing, reproduction, development and marine pollution in gastropods. She is currently investigating the effects of climate change and ocean acidification on marine gastropods using experimental treatments and micro-CT tomography, after a postdoc funding award (ELIDEK, HFRI; 2018-2021). Her research has been also funded by Latsis Foundation (2014) and ASSEMBLE Programme (2012, 2013). Published 70 scientific articles and book chapters; participated in many conferences. Contributing editor in MMS, Frontiers and JMSE, BDJ; Reviewer in 25 journals; Expert evaluator and Vice Chair in EU proposals. Has wide experience on the management and implementation of international and national projects (leader in 8, participant in 19). She is the scientific coordinator and the national representative of the ERFI Research Infrastructure LifewatchGreece. Has organised environmental education and citizen science awareness actions and has supervised several MSc and BSc students. |
 | Skouradakis Grigorios | Research fellow | gskouradakis@hcmr.gr +302810337743 | Marine biology & ecology | Main Building | 0000-0002-8482-460X | Main Building | Marine biology & ecology of Mediterranean rocky reefs, Non indigenous marine species | ||||||
 | Santi Ioulia | Research fellow | isanti@hcmr.gr 0030 2810 33 7727 | Marine Microbiology | Main Building | https://www.linkedin.com/in/ioulia-santi-4a1939a6 | https://orcid.org/0000-0002-0202-8256 | Main Building | -Marine microbiology -Microbial ecology -Marine plankton -Genomic Observatories -Biodiversity Observation -Genomic Data | My research focuses on the structure and composition of microbial communities in the marine environment with an emphasis on microbial plankton eukaryotes. I am particularly interested in the ecology of microorganisms in their natural environment. I have gained experience in different techniques such as DNA metabarcoding, metagenomics, next-generation sequencing, flow cytometry and the use of statistics in ecology. In addition, I work with genomic observatories and particularly on the EMBRC-established long term biodiversity observatory EMO BON (European Marine Omics Biodiversity Observation Network). | ||||
 | Radojicic Jelena | Research fellow | jelena@hcmr.gr +302810337737 | Genetics and Evolution | Main Building | Jelena Radojicic | Main Building | Population genetics Molecular phylogeny and evolution Hybridization and mitochondrial DNA heteroplasmy Genome analysis of genetic variants in complex diseases | ||||||
 | Kristoffersen Jon Bent | Research fellow | jonbent@hcmr.gr 2810337717 | Population genetics, genomics, biodiversity | Main Building | 0000-0002-8804-1864 | Jon Bent Kristoffersen | 015 | Main Building | Genomics, biodiversity, evolution | I am a Marine biologist - Molecular biologist. I got my Ph.D. in biology (1999) from the University of Bergen, Norway. In 2001 I came to IMBBC with an individual Marie Curie Post-doc Fellowship. Since then I have participated as project member in a number of international and national research programs. Since 2014 I have been managing the IMBBC Next Generation Sequencing facilities (Illumina MiSeq and Oxford Nanopore MinION). My main expertise is in NGS and third-generation sequencing techniques, with broad experience in all steps from study design, library construction, sequencing, and data analysis. In the last years I have mainly worked on microbiome sequencing from environmental samples (e.g. water, soil, sediments), and on whole genome sequencing from bacteria and eukaryotes using both Illumina and Nanopore sequencing technologies. | |||
 | Keklikoglou Niki | Research fellow | keklikoglou@hcmr.gr 2810337740 | Marine Biology | Main Building | 0000-0002-6693-2033 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 038 | Main Building | -Benthic Ecology -Micro-computed tomography -Marine Biodiversity -Ocean acidification -Bioimaging -Taxonomy | 2014 M.Sc. degree in "Environmental Biology: Management of Terrestrial and Marine Resources" University of Crete (Department of Biology), Hellenic Centre for Marine Research, Natural History Museum of Crete 2005-2011 BSc in Biology, School of Biology, Aristotle University of Thessaloniki | Kleoniki (Niki) Keklikoglou is a marine biologist in the Institute of Marine Biology, Biotechnology and Aquaculture of the Hellenic Centre for Marine Research (HCMR). She took her Master Degree on Management of Terrestrial and Marine Resources at the University of Crete. During her PhD, she studied the effects of light pollution on coastal benthic ecosystems. Her main research interests are related with marine biodiversity (especially benthic organisms), ecology and micro-Computed tomography (micro-CT). She has published 36 scientific papers and participated in international conferences and training courses. She has actively participated in several research projects, including FP7 European projects, Horizon 2020, ENPI CBC-MED, INTERREG and national projects. She has participated as the Principle Investigator from HCMR in 1 national (EPAnEK) and 3 European (2 Horizon Europe and 1 EMBRC grant) projects. | ||
 | Mastoraki Maria | Research fellow | mmastoraki@hcmr.gr +302810337874 | Aquaculture, Fish Physiology, Nutrition | https://orcid.org/0000-0002-8713-5199 | Aquaculture Innovative Feed Ingredients Fish and Decapod Crustacean Nutrition | Maria Mastoraki is a biologist and has aquired her PhD from the Aristotle University of Thessaloniki (AUTH), Greece. She studied the effect of dietary insect larvae meals on fish and decapod crustacean physiology. Her interest lies in sustainable aquafeeds and her research aims at evaluating innovative feed ingredients considering the physiology and welfare of the farmed species and the nutritional value of the final product. Maria has been involved in projects investigating nutritional requirements, feed attractants, various alternative feed ingredients and feed supplementation. | |||||||
 | Stavroulaki Melanthia (Melina) | Research fellow | mstavroulaki@hcmr.gr 2810337719 | Environmental genomics | Main Building | 15 | Main Building | Marine microbial biodiversity, Environmental genomics, Molecular biology | I am a Geneticist with a Master's degree in Medical Genetics. In 2007 I got my PhD in Medicine and for the next five years I was working in the private sector, offering Molecular diagnosis services, mainly from the post of the Lab manager and owner. In 2015 I began working at IMBBC-HCMR, as a post-doctoral researcher with main research interests in Marine Microbial Biodiversity, Metabarcoding and Environmental Genomics. Since 2018 I have been actively involved in the Ocean Sampling Day campaign (OSD) with the role of the Communication coordinator and since 2021 I participate to the coordination and organisation of the Atlantic Ecosystems Assessment, Forecasting and Sustainability (AtlantECO) sampling campaigns. In 2020 I was offered the post of the National communication officer for EMBRC (The European Marine Biological Resource Centre) and since 2021 I am a member of the operational committee of the European Marine Omics Biodiversity Network (EMOBON), while at the same time I co-coordinate the Greek team of the network. | |||||
 | Gioti Anastasia | Research fellow | n.gioti@hcmr.gr 2810337719 | Main Building | https://www.linkedin.com/in/anastasia-gioti-203a1474 | 0000-0001-8680-5974 | Main Building | Fungi, evolution of reproductive mode, symbiosis, bioremediation, transposable elements, multi-omic data integration, metagenomics, biodiversity | Researcher in Microbial Bioinformatics, with more than 20 years post-doctoral experience in the UK, Sweden, USA, and Greece. Initially trained in Biology (NKUA), I obtained a Masters and a PhD in Genomics (University Paris-Sud, France) and switched into Bioinformatics following a specialized course (Institut Pasteur Paris). In my research so far, I have investigated pathogenicity, symbiosis, and genome evolution in fungi and bacteria, using a range of data technologies and types (-omic, meta-, text). I have additionally taught Biology, Statistics and Bioinformatics at the BSc. and MSc. level as an Assistant Professor (American Farm School, Thessaloniki). At HCMR, I am conducting research on marine fungi, which represent an untapped source of chemical and taxonomic diversity. Combining access to emerging -global and local- collections, and high-performance computing facilities, I generate and compare annotated genomes and transcriptomes of isolates from diverse habitats. Long-term questions in these data include symbiosis, adaptation to marine environments and reproductive mode. Areas of ongoing research include bioremediation/biotechnology (Plastomics, CMBR), and changes in marine animal symbiotic communities in climate change scenarios (MACCIMO). | |||||
 | Stavrakidis-Zachou Orestis | Research fellow | ostavrak@hcmr.gr +302810337779 | Climate Change, Physiology, Mathematical Modeling | Aqualabs | https://www.linkedin.com/in/orestis-stavrakidis-0a891bb6/ | 0000-0003-4451-2916 | Aqualabs | climate change, fish physiology, mathematical modelling, DEB | Study of fish thermal stress (climate change) and determination of rearing parameters for optimum biological performance using mathematical (modelling) and experimental (physiology) approaches. Mathematical modelling of biological systems with focus on fish bioenergetics and particularly the effects of temperature and feeding on fish metabolism. species of interest: E. seabass, g. seabream, meagre, g. amberjack. | ||||
 | Tsaparis Dimitris | Research fellow | tsaparis@hcmr.gr +30 2810 337825 | Main Building | 0000-0001-9626-5553 | Dimitris Tsaparis | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Main Building | Conservation Genetics, Molecular Ecology, Population Genetics, Phylogeography, Population Ecology | 2003-2012 PhD in Biology, National & Kapodistrian University of Athens, Greece 1997-2002 Degree in Biology, National & Kapodistrian University of Athens, Greece | Dr. Tsaparis is a Research Fellow (post doc) in IMBBC/HCMR and holds a PhD in Biology/Zoology from the National and Kapodistrian University of Athens. His main fields of interest are Conservation Genetics/Genomics, Molecular Ecology and Phylogeography. He has significant experience in contacting field surveys for sample collection and in genetic/genomic data production and analysis. He is skilled in modern molecular biology techniques including nucleic acids extraction/optimization (from various sources) and NGS libraries preparation. He has participated in more than 13 European and National research projects working on topics relevant to biodiversity (mainly genetic diversity) monitoring and conservation issues. He mostly studies the genetic structure and connectivity of natural populations of vertebrates, exploring the ways that evolutionary, ecological or anthropogenic factors have contributed in shaping current geographical patterns of genetic variation. Dr. Tsaparis is mostly interested in working with species and populations valuable for conservation and management. During the last years he has focused on alien species and on application of genomics to marine stock identification. | |||
 | Angelis Christos | Scientific-Technical Staff | aggelis@hcmr.gr | |||||||||||
 | Antoniou Aglaia (Cilia) | Scientific-Technical Staff | antoniou@hcmr.gr +30 2810 337826 | Main Building | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Main Building | 2000 B.Sc. Biology, University of Crete, Greece Dissertation Title: “Research into the freshwater snails of Crete” 2002 M.Sc. Environmental Biology, University of Crete, Greece Dissertation Title: “Population structure of brown hares (Lepus europaeus) of Crete” 2008 Ph.D. Environmental Biology, University of Crete, Greece Dissertation Title: “Unravelling the evolutionary history of European hare (Lepus europaeus Pallas, 1778) in Balkans” | Evolutionary Biology, Biodiversity, Population genetics/omics, Phylogenetics, Phylogeography, Landscape/Seascape genomics, Speciation, Molecular Systematics, Species delimitation, Hybridization, Adaptation. One of her main goals is to bridge the realm of theoretical and experimental population genetics in an attempt to study genetic diversity under a multidisciplinary framework that applies to data collection, analysis and interpretation. | ||||||
 | Asderis Michail | Scientific-Technical Staff | asderis@hcmr.gr | CHANIA SOUDA AQUACULTURE | Aquaculture, Aquaculture new technologies,Fish feeding,growing, behaviour. | |||||||||
 | Vasilaki Antigoni | Scientific-Technical Staff | avasilaki@hcmr.gr 2291076497 | Anavissos | 0000-0002-0110-5133 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Anavissos | Aquaculture / Fish Nutrition Fish feeds production and development Biochemical analysis / HPLC-GC analysis | 2002-2007 Technological Educational Institute of Agricultural Technology, Department of Aquaculture and Fisheries,Institute of Igoumenitsa | Antigoni Vasilaki is a Research Scientist with over 19 years of experience at the Hellenic Centre for Marine Research (HCMR). Her expertise lies in fish nutrition, feed technology, and aquaculture sustainability, with a strong focus on the replacement of fishmeal and fish oil with alternative, locally produced, and biotechnologically enhanced raw materials. She has extensive hands-on experience in feed formulation, extrusion processing, and fish rearing trials, as well as in the chemical and biochemical characterization of feeds and fish tissues using advanced analytical techniques. Her PhD research focused on the nutritional physiology and feeding of European sea bass (Dicentrarchus labrax), investigating the use of biotechnologically processed forage legumes (e.g., white lupin) through solid-state fermentation and enzymatic hydrolysis as sustainable protein sources in aquafeeds. She has actively contributed to multiple EU, national, and industry-funded projects addressing the integration of plant-based and novel ingredients in aquaculture diets, assessing their effects on growth performance, nutrient digestibility, and overall fish health. She has published sixteen peer-reviewed scientific articles and presented her research at numerous international conferences. | ||||
 | Nikolaos Mparitakis | Scientific-Technical Staff | baritos@hcmr.gr | |||||||||||
 | Bouziotis Dimitrios | Scientific-Technical Staff | d.bouziotis@hcmr.gr | PhD in Fish Immunology | ||||||||||
 | Chatzigeorgiou Giorgos | Scientific-Technical Staff | chatzigeorgiou@hcmr.gr +3028120337741 | Marine Ecology | Main Building | https://www.linkedin.com/in/giorgos-chatzigeorgiou-61190a72/ | 0000-0003-3507-6542 | AAK-7339-2020 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 041 | Main Building | Polychaetes Taxonomy, Non-Indigenous Species, Coastal Diversity, Scientific Diving | Dr. Giorgos Chatzigeorgiou is a post doc researcher in the Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC) of the Hellenic Centre for Marine Research (HCMR). His research interests cover a range of issues, many of which fall within the scope of Marine ecology, systematic, conservation of marine shallow habitats and invasive species. He is a member of Scientific Diving Team of HCMR, with great experience in underwater photography and visual census. He is also specialized in biology, ecology and systematic of benthic species (polychaetes). In addition, he has great experience in designing new sampling devices and experimental setups for underwater experiments / habitat mapping, sampling hard bottom communities with distractive and non- distractive techniques. He has published 21 scientific papers and participated in several scientific conferences and actively involved in several research projects, including FP6-FP7 European projects, Horizon 2020, ENPI CBC-MED, INTERREG and national projects. | |
 | Nikoloudaki Chrisanthi | Scientific-Technical Staff | cnikol@hcmr.gr 210 9856725 | Anavissos | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Γ9 | Anavissos | Aquaculture Biochemical Analysis Feed preparation Fish nutrition Microbiology analysis Specialization in Histological analysis | 2001-2006 Bachelor of Aquaculture and Fisheries, faculty Agricultural Technology T.EI. of Mesologi, Technological Educational Institution. | |||||
 | Darivianakis Stelios | Scientific-Technical Staff | daris@hcmr.gr 2810337825 | Molecular Biology-Genetics | Main Building | 153 | Main Building | Stelios Darivianakis is working as a scientific research technician at the Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC) in the Hellenic Centre for Marine Research (HCMR). He assumed his duties in June 1997. He has a long-time experience in molecular biology techniques and protocols commonly used in population genetic studies and selective breeding programs, moreover Stelios has experience in sampling of seawater and sediment for ecological studies from fish farms and field work for the needs of research programs Building on his electronic engineering background he is also constructing, maintaining and operating standard laboratory equipment, for example centrifuges, titrators, pipetting machines and pH meters ensuring the laboratory is well-stocked. He is also involved in the ordering of lab equipment and consumables to ensure continuous operations, and following up with suppliers and procurement where needed. Stelios Darivianakis holds a bachelor's degree in Chemistry from Aristotle University, Thessaloniki, Greece. | ||||||
 | Kokkari Constantina | Scientific-Technical Staff | dkok@hcmr.gr +302810337761 | Aqualabs | https://orcid.org/0000-0001-8510-9360 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Aqualabs | Bacteriophages Autogenous Vaccines | 1987 - B.Sc. in Biology, University of Athens, Department of Biology, Athens, Greece | Constantina (Dida) Kokkari has been a research technician at HCMR since 1996, involved in several European and National research projects. She has considerable expertise in the determination of molecular, biochemical, hormonal and immunological parameters in plasma and tissues of marine fish species, by the use of PCR, RIA, ELISA, TLC, HPLC and GS methods and techniques. For the last ten years, she has worked on the identification of parasites and bacteria using classical microbiological and molecular techniques. Besides she has also worked on the study of bacteriophages as a preventive/therapeutic innovative approach against pathogenic fish bacteria and in the development of autogenous vaccines. C. Kokkari is a co-founder of "Aquatic Biologicals", a spin-off company of HCMR. | ||||
 | Mavraki Dimitra | Scientific-Technical Staff | dmavraki@hcmr.gr 00302810337740 | Data Stewardship | Main Building | https://linkedin.com/in/dimitra-mavraki-96473714 | https://orcid.org/0000-0001-6775-530X | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 40 | Main Building | FAIR data, data curation, Data Management Plans, environmental ontologies, Darwin Core Standards | 1997-2001 Environmental Studies, Aegean University,Greece 2001-2003 MSc in Water Resources Science and Technology, National Technical University of Athens (NTUA),Greece | Dimitra is an environmental scientist with post-graduate studies in Hydrology and Environmental Management of Water Resources. She has five years of experience in environmental impact assessments (EIA) for a wide range of projects (industrial sector, commercial sector, renewable energy plants), in sustainable development and regional management plans and in protection and restoration projects for the environment. She worked for four years at the European Institutions as an assistant of a Member of the European Parliament; specializing in energy and research issues. During the period 2011-2012, Dimitra worked as a policy adviser to the Greek Minister of Environment, Energy and Climate Change, specializing in renewable energy and energy efficiency policy issues. She has been working at the HCMR Crete since November 2013. She is now employed as Data Manager, focusing on marine data. She specializes in data collection and digitization, metadata use, open access e-infrastructures and services. She is actively involved in the LifeWatch ERIC, EMODNet and Assemble Plus projects, in which her role is to collect, digitise, quality control and upload the metadata and data on open access research infrastructures; such as the LifeWatchGreece RI and MEDOBIS ipt. | |
 | Drakaki Evangelia | Scientific-Technical Staff | e.drakaki@hcmr.gr | Fish Reproduction | Aqualabs | Aqualabs | Aquaculture Fish Physiology Fish Reproduction Histology | I work as a Research Technician in broodstock management facilities at the Laboratory of Reproduction and Physiology of the Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC).I have been actively involved in broodstock handling, reproductive monitoring, and the implementation of protocols to support optimal spawning performance. My role includes data collection and maintaining high standards in aquatic animal care. I am passionate about contributing to the development of efficient and sustainable aquaculture practices through hands-on experience and continuous learning. | ||||||
 | Κagiampaki Eirini | Scientific-Technical Staff | e.kagiampaki@hcmr.gr | Bioanalysis and Marine Biotecnhology | https://orcid.org/0009-0000-3983-9565 | Δ1, Library | Environmental Chemistry Analytical Chemistry Marine pollution and its control Bioanalysis Biotoxins | |||||||
 | Koumpaki Eleni | Scientific-Technical Staff | e.koumpaki@hcmr.gr | Marine Ecology, Ocean Literacy | Main Building | https://www.linkedin.com/in/eleni-koumpaki | https://orcid.org/0009-0001-5317-590X | Main Building | Marine Biodiversity and Conservation, Coastal Ecosystem Ecology and Management, Ocean literacy | Eleni Koumpaki is a Biotechnologist with an MSc in Environmental Biology from the University of Crete and a Research Technician at the Ecology and Ecosystem Management Laboratory of the Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC) at the Hellenic Center for Marine Research (HCMR). Her research focuses on marine biodiversity and conservation, with particular interest in coastal ecosystems, their ecological processes, and the factors influencing biodiversity patterns. She is involved in projects related to ecosystem monitoring and management, combining taxonomy, fieldwork, and ecological assessments. Her work also includes ocean literacy initiatives and stakeholder engagement, supporting science-based approaches to the sustainable use and protection of marine resources. | ||||
 | Vernadou Emmanouela | Scientific-Technical Staff | e.vernadou@hcmr.gr +30 2810337742 | Marine Biology | Main Building | 042 | Main Building | Scientific Diving Marine Biodiversity and Ecology Sponges Identification | ||||||
 | Sfakaki Evsevia | Scientific-Technical Staff | efsevia@hcmr.gr 2810337774 | Live Food for Aquaculture | Aqualabs | Aqualabs | ||||||||
 | Dafnomili Eleni | Scientific-Technical Staff | eleni@hcmr.gr 2810337841 | Ecology and Ecosystem management | Main Building | 141,145 | Main Building | Environmental Chemistry Marine Ecology Ecosystem management | Eleni Dafnomili is a research technician at the Environmental Chemistry Laboratory at HCMR Crete. She has a B.Sc. degree in Physics. Her work includes: Sampling of seawater and sediment for ecological studies, biochemical analysis for plant pigments, organic carbon and nitrogen analysis for seawater and sediment samples, measurements of nutrients, NanoMolar phosphates concentrations and particulate organic phosphates. | |||||
 | Panteri Emmanouela | Scientific-Technical Staff | emmipan@hcmr.gr 2810337797 | Computer Science | Main Building | https://www.linkedin.com/in/emmanouella-panteri-54992659 | 0000-0002-1075-4215 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 40 | Main Building | Computer Science, Citizen Science, Education, Web Development, Virtual Reality, Augmented Reality | Emmanouela is an Information Technology manager at the Hellenic Centre for Marine Research (HCMR). She has an M.Sc. degree in Computer Science and has been working in the IT field for more than 25 years. She specializes in Data Integration, Database Development, and Web-Based Applications. Currently, she is involved in the management and development of IMBBC websites. She is also involved in the development and implementation of citizen science projects, that aim at engaging citizen scientists in a coastal marine biodiversity observation network. Her focus is on data integration between web-based platforms and mobile-tablet applications. | ||
 | Maingot Eric Stefhane Jean | Scientific-Technical Staff | ericmain@hcmr.gr | |||||||||||
 | Strakadounas George | Scientific-Technical Staff | georgestr@hcmr.gr | |||||||||||
 | Rallis Ioannis | Scientific-Technical Staff | i.rallis@hcmr.gr | |||||||||||
 | Theocharis Iordanis | Scientific-Technical Staff | i.theocharis@hcmr.gr | |||||||||||
 | Filiopoulou Irene | Scientific-Technical Staff | filiop@hcmr.g 2810337797 | Main Building | https://www.linkedin.com/in/eirini-filiopoulou-6a3b887/ | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | 40 | Main Building | 2002 - 2006 PhD in Marine Biology, University of Wales, Bangor United Kingdom), School of Ocean Sciences, Faculty of Sciences and Engineering. Doctoral Thesis on "The ecology and growth of the netted dogwhelk Nassarius reticulatus (Gastropoda: Nassariidae)" | Irene is a mobile developer at the Hellenic Center for Marine Research (HCMR). She received her BSc and MSc degree in the fields of Information Systems and E-commerce Technologies in Computer Science Department from the University of Crete. She has worked in the Multimedia Laboratory at the University Of Crete as a mobile developer and in the Transformation Service Laboratory, also at University of Crete, where she has been involved in several projects. She has taught informatics lessons at Technological Educational Institute of Crete as an external laboratory partner (2009-2014). | ||||
 | Tasiouli Katerina | Scientific-Technical Staff | k.tasiouli@hcmr.gr | 0009-0001-3201-5675 | ||||||||||
 | Krystallas Apostolos | Scientific-Technical Staff | kristallas@hcmr.gr +302810337843 | Main Building | 143 | Main Building | Marine pollution monitoring Physicochemical parameters analysis of seawater, drinking water and wastewater Sediment analysis Microbiological analysis in seawater, drinking water and wastewater Application of a wide range of field sampling gears e.g. sediment samplers, plankton nets, water samplers, etc | |||||||
 | Loulakaki Melina | Scientific-Technical Staff | m.loulakaki@hcmr.gr | |||||||||||
 | Vasilakis Manos | Scientific-Technical Staff | manosv@hcmr.gr 7861 | Aqualabs | Aqualabs | Aquaculture, Fish Nutrition, Fish Behavior | ||||||||
 | Maidanou Maria | Scientific-Technical Staff | mariam@hcmr.gr 2810337842 | Main Building | 142 | Main Building | Marine Biodiversity (polychaetes, molluscs, crustaceans) Structure and dynamics of macro benthic assemblages Coastal zone management Marine pollution monitoring Environmental impact assessment Marine protected zones Effects of aquaculture in the marine environment Microbiological quality assessment in potable, fresh and marine waters (e.g. total and fecal coliforms, E. coli) | |||||||
 | Papadaki Maria | Scientific-Technical Staff | mpapadak@hcmr.gr +30 2810 337879 | Aqualabs | 0000-0002-7878-8868 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Aqualabs | Fish Physiology Fish Reproduction Histology Fish Endocrinology | 2000 B.Sc in Biology, Department of Biology, Aristotle University of Thessaloniki 2003 Master of Science in Management of Marine and Terrestrial Biological Resources, Department of Biology, University of Crete | As a research technician at the Laboratory of Reproduction and Physiology of the Institute of Marine Biology, Biotechnology and Aquaculture for more than twenty years, I have been involved in a number of national and European research projects on fish reproduction, mainly focusing on hermaphroditism, sex differentiation and reproductive cycles of cultured species. I have been engaged mostly in histological processing of fish gonads, estimation of fish sex steroid hormone levels with the use of enzyme-linked immunosorbent assays (ELISAs) and validation of GnRHa implants with in vitro and in vivo methods. Moreover, I have been appointed as the person responsible for the application of the EU Directive 2010/63 on animal experimentation in the aquaculture facilities of the Institute (Aqualabs). | ||||
 | Chelmis Nikos | Scientific-Technical Staff | n.chelmis@hcmr.gr | Main Building | https://www.linkedin.com/in/nikos-chelmis-373134146/ | 0009-0006-7333-1427 | Library Offices | Main Building | Conservation Genetics Molecular Ecology Population Genetics and Phylogeography Evolutionary Biology Environmental Genomics eDNA | |||||
 | Magoulas Nikos | Scientific-Technical Staff | n.magoulas@hcmr.gr | |||||||||||
 | Politakis Nektarios | Scientific-Technical Staff | n.politakis@hcmr.gr | Ecotoxicology Toxicology Immunohistochemistry | Anavissos | 0000-0001-6766-1338 | Anavissos | Toxicology and Ecotoxicology Bioassays Enzymatic activity ROS Immunohistochemistry | ||||||
 | Chronopoulos Petros | Scientific-Technical Staff | p.chronopoulos@hcmr.gr | Fish Nutrition - Aquafeed Production | Anavissos | Anavissos | Aquaculture Fish Nutrition Aquafeed Technology Biochemical Analysis Farm Business Management | Experienced Technician at HCMR for more than 7 years in the field of aquafeed production, fish nutrition and aquaculture technology, skilled in a wide range of laboratory techniques, as well as business management, consulting services and presentation skills. Currently, PhD student at the Agricultural University of Athens and my research is focused on the development of semi-moist aqua feeds and their performance in the nutrition of intensively farmed fish species. | ||||||
 | Tsoukali Panagiota | Scientific-Technical Staff | ptsoukali@hcmr.gr +302810337876 | Aqualabs | Aqualabs | Aquaculture Fish behavior Fish nutrition Histology | ||||||||
 | Sigelaki Irene | Scientific-Technical Staff | sigelakr@hcmr.gr +30 2810 337877 | Aqualabs | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | Aqualabs | Aquaculture Broodstock management Fish reproduction Fish Nutrition Histology | 2001 - Technological Educational Institute of Messolonghi, School of Aquaculture and Fisheries | Since 2001, I have been responsible for broodstock management and gamete quality in the Laboratory of Reproduction and Physiology of the Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC) of the Hellenic Center for Marine Research (HCMR). My work mostly focuses on: a) the study of fish reproductive biology and endocrinology, b) the monitoring of reproductive dysfunctions observed in male and female fish under captivity and c) the control of reproduction and induction of maturation in species of interest for aquaculture. Recently, our scope was to study large, benthic or pelagic species, such as the wreckfish (Polyprion americanus), the greater amberjack (Seriola dumerili), the bluefin tuna (Thunnus thynnus) and the meagre (Argyrosomus regius). My responsibilities involve fish maintenance and handling, egg collection and egg quality evaluation, fish feeding, water quality measurements, samplings for blood and tissues, hormonal treatments, sperm quality evaluation and histological processing of samples. My duties also involve student training. In the future I plan to continue working on fish reproductive biology, problems faced under captivity and methods to improve broodstock management in both cultured and new species. | |||||
 | Ninidakis Stelios | Scientific-Technical Staff | sninidakis@hcmr.gr | |||||||||||
 | Stefanakis Stelios | Scientific-Technical Staff | stelios.stefanakis@hcmr.gr 2810337758 | Aqualabs | Aqualabs | |||||||||
 | Papadimitriou Vasiliki | Scientific-Technical Staff | v.papad@hcmr.gr +30 2810337856 | Environmental Microbiology/ Extreme Environments | Main Building | linkedin.com/in/vasiliki-papadimitriou-6b7998186 | 147b | Main Building | ||||||
 | Terzoglou Vasso | Scientific-Technical Staff | vassoter@hcmr.gr | Molecular Biology-Genetics | Main Building | +30 2810 337838 | Main Building | population genetics/phylogeography studies | Mrs Vasso Terzoglou is working at IMBBC-HCMR as a scientific research technician. She has been involved in population genetics studies utilizing molecular markers i.e. RFLPs, microsatellites, mitochondrial DNA, allozymes etc. She has gained extensive experience in a variety of applications in molecular biology such as DNA and RNA extraction, PCR, cloning, genotyping, cDNA library construction, sequencing and sequences analysis. She has also been trained in the next generation sequencing technology (454-GSFLX, Junior, Roche, and MiSeq, Illumina). Parallel to her laboratory work she introduces undergraduate and postgraduate students to the use of molecular biology techniques and is following their progress. | |||||
 | Symeonidou Xeni | Scientific-Technical Staff | x.symeonidou@hcmr.gr | https://www.linkedin.com/in/xeni-symeonidou-674406298/ | https://orcid.org/0000-0002-2925-6996 | Ocean Literacy, Conservation, Biodiversity | A young researcher that is exploring the topic of Ocean Literacy and ways it can assist in conservation efforts for marine coastal areas. After finishing my degree in Biology (AUTH), I voluntereed in a Marine Protected Area in Italy, where I learnt about the importance of communication of the scientific efforts and the signficance of the marine environment. Later I pursued and graduated IMBRSea, an international MSc degree on Marine Biology, that gave me the chance to travel around Europe, equip my toolkit and focus more in areas of my interests. My thesis took place in HCMR under the framework of BlueLightS with topic: Integrating Ocean Literacy in conservation of marine coastal areas: the case study of Elounda bay. Currently i am working In the Horizon EU funded project BlueLightS, which focuses in the integration of Blue education in european schools. | |||||||
 | Gratsia Eirini | PhD Student | e.gratsia@hcmr.gr | Non-Indigenous Species | Main Building | 0000-0001-5496-0224 | Main Building | Alien species Tunicates Anthropogenic environments Fouling macroinvertebrates | Eirini Gratsia (applicant) is currently a PhD candidate in the University of Crete and HCMR, working on molecular approaches for the study of alien marine macroinvertebrates of the eastern Mediterranean, specializing in the distribution of cryptic species of the Ascidiaceae family. She has expertise on molecular biology (DNA barcoding and metabarcoding). She has worked in European projects on alien species, DNA barcoding of various macroinvertebrates and identification of species found aggregating in ship hauls. She has also participated in a number of samplings in marinas, for her PhD and for other projects as well. | |||||
 | Roussos Efstratios | PhD Student | e.roussos@hcmr.gr | |||||||||||
 | Anastasiou Thekla | PhD Student | theanast@hcmr.gr +30 2810337813 | Bioanalysis | Main Building | 042 | Main Building | Bioanalysis Marine Pollution and Biomonitoring Chemical Analysis of Biomolecules and Organic Pollutants Chromatography Analytical chemistry Marine Products Marine Biodiversity | Thekla Anastasiou is a Biologist with an MSc in Environmental Biology and Management of Terrestrial and Marine Biological Resources, employed as lab technician at IMBBC-HCMR since 2018. Her research interests include marine pollution and biomonitoring, chemical analysis of biomolecules and organic pollutants, marine products and marine biodiversity. She has participated in various research activities ranging from tetrodotoxin (TTX) and hormone analysis in fish serum and tissues using liquid chromatography-coupled with double mass spectrometry (LC-MS/MS), to extraction of total genetic material and analysis of the 16S rRNA gene for the identification of microbial communities. She is currently involved in SPINAQUA project, where she supports the implementation of the research activities regarding the bioremediation capacity and bioproduction potential of sponges. | |||||
 | Triga Adriana | PhD Student | triga@hcmr.gr +302810337762 | Fish Diseases, Microbiology | Aqualabs | https://linkedin.com/in/adriana-triga-8aa29b114 | https://orcid.org/0000-0003-2751-3829 | Aqualabs | Fish Pathology, Microbiology, Molecular Biology, Genomics | I am interested in aquaculture diseases and how antibiotic adaptation affects bacterial pathogens. I have recently completed my PhD at University of Crete, under the supervision of dr. Pantelis Katharios. My research project was about microbial evolution and the metabolic cost of antibiotic resistance. My research was about an evolutionary adaptation model with bacterial fish pathogens and antibiotics used in the Mediterranean aquaculture. Our objective is the study of the genetic and environmental factors affecting the bacteria causing fish diseases. | ||||
 | Friligou Christina | Administrative Personnel | chfril@hcmr.gr +30 2111605106 | Anavissos | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | +30 2111605106 | Anavissos | administrative support,travel arrangements,expense reporting,calendar management,enterprise-customer servise,event coordination,project management ,budget administration | 1996-2001 - Panteio University,"Business Administration Diploma" | |||||
 | Mironaki Eftichia | Administrative Personnel | e.mironaki@hcmr.gr + 30 2810 337801 | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | ||||||||||
 | Dorier Francine | Administrative Personnel | francine@hcmr.gr +30 211165107 | Anavissos | Main Building of HCMR Thalassocosmos, 71500 Gournes Heraklion, Crete, Greece | +30 211165107 | Anavissos | |||||||
 | Skoula Maria | Administrative Personnel | msimbc@hcmr.gr | + 30 2810 337766 |
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