Haris Zafeiropoulos

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2023

Zafeiropoulos, Haris; Beracochea, Martin; Ninidakis, Stelios; Exter, Katrina; Potirakis, Antonis; De Moro, Gianluca; Richardson, Lorna; Corre, Erwan; Machado, João; Pafilis, Evangelos; Kotoulas, Georgios; Santi, Ioulia; Finn, Robert D; Cox, Cymon J; Pavloudi, Christina

metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data Journal Article

GigaScience, 12 , pp. giad078, 2023, ISSN: 2047-217X.

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Garza, Daniel Rios; Gonze, Didier; Zafeiropoulos, Haris; Liu, Bin; Faust, Karoline

Metabolic models of human gut microbiota: Advances and challenges Journal Article

Cell Systems, 14 (2), pp. 109–121, 2023, ISSN: 24054712.

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2022

Pavloudi, Christina; Zafeiropoulos, Haris

Deciphering the community structure and the functional potential of a hypersaline marsh microbial mat community Journal Article

FEMS Microbiology Ecology, 98 (12), pp. fiac141, 2022, ISSN: 1574-6941.

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Zafeiropoulos, Haris; Paragkamian, Savvas; Ninidakis, Stelios; Pavlopoulos, Georgios A; Jensen, Lars Juhl; Pafilis, Evangelos

PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types Journal Article

Microorganisms, 10 (2), pp. 293, 2022, ISSN: 2076-2607.

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Paragkamian, Savvas; Sarafidou, Georgia; Mavraki, Dimitra; Pavloudi, Christina; Beja, Joana; Eliezer, Menashè; Lipizer, Marina; Boicenco, Laura; Vandepitte, Leen; Perez-Perez, Ruben; Zafeiropoulos, Haris; Arvanitidis, Christos; Pafilis, Evangelos; Gerovasileiou, Vasilis

Automating the Curation Process of Historical Literature on Marine Biodiversity Using Text Mining: The DECO Workflow Journal Article

Frontiers in Marine Science, 9 , pp. 940844, 2022, ISSN: 2296-7745.

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2021

Polymenakou, Paraskevi N; Nomikou, Paraskevi; Zafeiropoulos, Haris; Mandalakis, Manolis; Anastasiou, Thekla I; Kilias, Stephanos; Kyrpides, Nikos C; Kotoulas, Georgios; Magoulas, Antoniοs

The Santorini Volcanic Complex as a Valuable Source of Enzymes for Bioenergy Journal Article

Energies, 14 (5), pp. 1414, 2021, ISSN: 1996-1073.

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Zafeiropoulos, Haris; Gioti, Anastasia; Ninidakis, Stelios; Potirakis, Antonis; Paragkamian, Savvas; Angelova, Nelina; Antoniou, Aglaia; Danis, Theodoros; Kaitetzidou, Eliza; Kasapidis, Panagiotis; Kristoffersen, Jon Bent; Papadogiannis, Vasileios; Pavloudi, Christina; Ha, Quoc Viet; Lagnel, Jacques; Pattakos, Nikos; Perantinos, Giorgos; Sidirokastritis, Dimitris; Vavilis, Panagiotis; Kotoulas, Georgios; Manousaki, Tereza; Sarropoulou, Elena; Tsigenopoulos, Costas S; Arvanitidis, Christos; Magoulas, Antonios; Pafilis, Evangelos

0s and 1s in marine molecular research: a regional HPC perspective Journal Article

GigaScience, 10 (8), pp. giab053, 2021, ISSN: 2047-217X.

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Zafeiropoulos, Haris; Gargan, Laura; Hintikka, Sanni; Pavloudi, Christina; Carlsson, Jens

The Dark mAtteR iNvestigator (DARN) tool: getting to know the known unknowns in COI amplicon data Journal Article

Metabarcoding and Metagenomics, 5 , pp. e69657, 2021, ISSN: 2534-9708.

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2020

Zafeiropoulos, Haris; Viet, Ha Quoc; Vasileiadou, Katerina; Potirakis, Antonis; Arvanitidis, Christos; Topalis, Pantelis; Pavloudi, Christina; Pafilis, Evangelos

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes Journal Article

GigaScience, 9 (3), 2020, ISSN: 2047-217X, (_eprint: https://academic.oup.com/gigascience/article-pdf/9/3/giaa022/32894405/giaa022.pdf).

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