Costas Tsigenopoulos

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2022

Vela-Avitúa, Sergio; Thorland, Ingunn; Bakopoulos, Vasileios; Papanna, Kantham; Dimitroglou, Arkadios; Kottaras, Eleftherios; Leonidas, Papaharisis; Guinand, Bruno; Tsigenopoulos, Costas S; Aslam, Muhammad L

Genetic Basis for Resistance Against Viral Nervous Necrosis: GWAS and Potential of Genomic Prediction Explored in Farmed European Sea Bass (Dicentrarchus labrax) Journal Article

Frontiers in Genetics, 13 , pp. 804584, 2022, ISSN: 1664-8021.

Abstract | Links | BibTeX

García-Escudero, Catalina A; Tsigenopoulos, Costas S; Gerakaris, Vasilis; Tsakogiannis, Alexandros; Apostolaki, Eugenia T

ITS DNA Barcoding Reveals That Halophila stipulacea Still Remains the Only Non-Indigenous Seagrass of the Mediterranean Sea Journal Article

Diversity, 14 (2), pp. 76, 2022, ISSN: 1424-2818.

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Oikonomou, Stavroula; Samaras, Athanasios; Tekeoglou, Maria; Loukovitis, Dimitrios; Dimitroglou, Arkadios; Kottaras, Lefteris; Papanna, Kantham; Papaharisis, Leonidas; Tsigenopoulos, Costas S; Pavlidis, Michail; Chatziplis, Dimitrios

Genomic Selection and Genome-Wide Association Analysis for Stress Response, Disease Resistance and Body Weight in European Seabass Journal Article

Animals, 12 (3), pp. 277, 2022, ISSN: 2076-2615.

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Angelova, Nelina; Danis, Theodoros; Lagnel, Jacques; Tsigenopoulos, Costas S; Manousaki, Tereza

SnakeCube: containerized and automated pipeline for de novo genome assembly in HPC environments Journal Article

BMC Research Notes, 15 (1), pp. 98, 2022, ISSN: 1756-0500.

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Nousias, O; Oikonomou, S; Manousaki, T; Papadogiannis, V; Angelova, N; Tsaparis, D; Tsakogiannis, A; Duncan, N; Estevez, A; Tzokas, K; Pavlidis, M; Chatziplis, D; Tsigenopoulos, C S

Linkage mapping, comparative genome analysis, and QTL detection for growth in a non-model teleost, the meagre Argyrosomus regius, using ddRAD sequencing Journal Article

Scientific Reports, 12 (1), pp. 5301, 2022, ISSN: 2045-2322.

Abstract | Links | BibTeX

Tsaparis, Dimitrios; Lecocq, Thomas; Kyriakis, Dimitrios; Oikonomaki, Katerina; Fontaine, Pascal; Tsigenopoulos, Costas S

Assessing Genetic Variation in Wild and Domesticated Pikeperch Populations: Implications for Conservation and Fish Farming Journal Article

Animals, 12 (9), pp. 1178, 2022, ISSN: 2076-2615.

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2021

Nousias, Orestis; Tzokas, Konstantinos; Papaharisis, Leonidas; Ekonomaki, Katerina; Chatziplis, Dimitrios; Batargias, Costas; Tsigenopoulos, Costas S

Genetic Variability, Population Structure, and Relatedness Analysis of Meagre Stocks as an Informative Basis for New Breeding Schemes Journal Article

Fishes, 6 (4), pp. 78, 2021, ISSN: 2410-3888.

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Oikonomou, Stavroula; Tsakogiannis, Alexandros; Kriaridou, Christina; Danis, Theodoros; Manousaki, Tereza; Chatziplis, Dimitris; Papandroulakis, Nikos; Mylonas, Constantinos C; Triantafyllidis, Alexandros; Tsigenopoulos, Costas S

First linkage maps and a pilot QTL analysis for early growth performance in common dentex (Dentex dentex) and sharpsnout seabream (Diplodus puntazzo) Journal Article

21 , pp. 100855, 2021, ISSN: 23525134.

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Peñaloza, C; Manousaki, T; Franch, R; Tsakogiannis, A; Sonesson, A K; Aslam, M L; Allal, F; Bargelloni, L; Houston, R D; Tsigenopoulos, C S

Development and testing of a combined species SNP array for the European seabass (Dicentrarchus labrax) and gilthead seabream (Sparus aurata) Journal Article

Genomics, 113 (4), pp. 2096–2107, 2021, ISSN: 08887543.

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Tsaparis, Dimitris; Konstantinidis, Ioannis; Palandacic, Anja; Kalogianni, Eleni; Stoumboudi, Maria Th.; Barbieri, Roberta; Vardakas, Leonidas; Koutsikos, Nicholas; Tsigenopoulos, Costas S

DNA barcoding provides new insights on the distribution, systematics and conservation of the freshwater genus Pelasgus (Cypriniformes: Cyprinidae) in Greece Journal Article

Hydrobiologia, 848 (5), pp. 1163–1176, 2021, ISSN: 0018-8158, 1573-5117.

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Krick, Madoka Vera; Desmarais, Erick; Samaras, Athanasios; Guéret, Elise; Dimitroglou, Arkadios; Pavlidis, Michalis; Tsigenopoulos, Costas; Guinand, Bruno

Family-effects in the epigenomic response of red blood cells to a challenge test in the European sea bass (Dicentrarchus labrax, L.) Journal Article

BMC Genomics, 22 (1), pp. 111, 2021, ISSN: 1471-2164.

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Mladineo, Ivona; Hrabar, Jerko; Trumbić, Željka; Manousaki, Tereza; Tsakogiannis, Alexandros; Taggart, John B; Tsigenopoulos, Costas S

Community Parameters and Genome-Wide RAD-Seq Loci of Ceratothoa oestroides Imply Its Transfer between Farmed European Sea Bass and Wild Farm-Aggregating Fish Journal Article

Pathogens, 10 (2), pp. 100, 2021, ISSN: 2076-0817.

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Papapetrou, Maria; Kazlari, Zoi; Papanna, Kantham; Papaharisis, Leonidas; Oikonomou, Stavroula; Manousaki, Tereza; Loukovitis, Dimitrios; Kottaras, Lefteris; Dimitroglou, Arkadios; Gourzioti, Evgenia; Pagonis, Charalampos; Kostandis, Andreas; Tsigenopoulos, Costas S; Chatziplis, Dimitrios

On the trail of detecting genetic (co)variation between resistance to parasite infections (Diplectanum aequans and Lernanthropus kroyeri) and growth in European seabass (Dicentrarchus labrax) Journal Article

Aquaculture Reports, 20 , pp. 100767, 2021, ISSN: 23525134.

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Superio, Joshua; Fakriadis, Ioannis; Tsigenopoulos, Costas S; Lancerotto, Stefano Adam; Rodriguez, Andrea Villena; Vervelakis, Emanuele; Mylonas, Constantinos C

Spawning kinetics and parentage contribution of European sea bass (Dicentrarchus labrax) broodstocks, and influence of GnRHa-induced spawning Journal Article

Aquaculture Reports, 21 , pp. 100766, 2021, ISSN: 23525134.

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Zafeiropoulos, Haris; Gioti, Anastasia; Ninidakis, Stelios; Potirakis, Antonis; Paragkamian, Savvas; Angelova, Nelina; Antoniou, Aglaia; Danis, Theodoros; Kaitetzidou, Eliza; Kasapidis, Panagiotis; Kristoffersen, Jon Bent; Papadogiannis, Vasileios; Pavloudi, Christina; Ha, Quoc Viet; Lagnel, Jacques; Pattakos, Nikos; Perantinos, Giorgos; Sidirokastritis, Dimitris; Vavilis, Panagiotis; Kotoulas, Georgios; Manousaki, Tereza; Sarropoulou, Elena; Tsigenopoulos, Costas S; Arvanitidis, Christos; Magoulas, Antonios; Pafilis, Evangelos

0s and 1s in marine molecular research: a regional HPC perspective Journal Article

GigaScience, 10 (8), pp. giab053, 2021, ISSN: 2047-217X.

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Danis, Theodoros; Papadogiannis, Vasileios; Tsakogiannis, Alexandros; Kristoffersen, Jon B; Golani, Daniel; Tsaparis, Dimitris; Sterioti, Aspasia; Kasapidis, Panagiotis; Kotoulas, Georgios; Magoulas, Antonios; Tsigenopoulos, Costas S; Manousaki, Tereza

Genome Analysis of Lagocephalus sceleratus: Unraveling the Genomic Landscape of a Successful Invader Journal Article

Frontiers in Genetics, 12 , pp. 2481, 2021, ISSN: 1664-8021.

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2020

Chatziplis, Dimitrios; Oikonomou, Stavroula; Loukovitis, Dimitrios; Tsiokos, Dimitrios; Samaras, Athanasios; Dimitroglou, Arkadios; Kottaras, Lefteris; Papanna, Kantham; Papaharisis, Leonidas; Tsigenopoulos, Costas; Pavlidis, Michail

QTL for Stress and Disease Resistance in European Sea Bass, Dicentrarhus labrax L. Journal Article

Animals, 10 (9), pp. 1668, 2020, ISSN: 2076-2615.

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Nousias, Orestis; Tsakogiannis, Alexandros; Duncan, Neil; Villa, Javier; Tzokas, Kostas; Estevez, Alicia; Chatziplis, Dimitrios; Tsigenopoulos, Costas S

Parentage assignment, estimates of heritability and genetic correlation for growth-related traits in meagre Argyrosomus regius Journal Article

Aquaculture, 518 , pp. 734663, 2020, ISSN: 00448486.

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Koutsouveli, Vasiliki; Manousaki, Tereza; Riesgo, Ana; Lagnel, Jacques; Kollias, Spyros; Tsigenopoulos, Costas S; Arvanitidis, Christos; Dounas, Costas; Magoulas, Antonios; Dailianis, Thanos

Gearing Up for Warmer Times: Transcriptomic Response of Spongia officinalis to Elevated Temperatures Reveals Recruited Mechanisms and Potential for Resilience Journal Article

Frontiers in Marine Science, 6 , pp. 786, 2020, ISSN: 2296-7745.

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Aslam, Muhammad Luqman; Carraro, Roberta; Sonesson, Anna Kristina; Meuwissen, Theodorus; Tsigenopoulos, Costas S; Rigos, George; Bargelloni, Luca; Tzokas, Konstantinos

Genetic Variation, GWAS and Accuracy of Prediction for Host Resistance to Sparicotyle chrysophrii in Farmed Gilthead Sea Bream (Sparus aurata) Journal Article

Frontiers in Genetics, 11 , pp. 594770, 2020, ISSN: 1664-8021.

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Polovina, Eirini-Slavka; Kourkouni, Evelina; Tsigenopoulos, Costas S; Sanchez-Jerez, Pablo; Ladoukakis, Emmanuel D

Genetic structuring in farmed and wild Gilthead seabream and European seabass in the Mediterranean Sea: implementations for detection of escapees Journal Article

Aquatic Living Resources, 33 , pp. 7, 2020, ISSN: 1765-2952.

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2019

Manousaki, Tereza; Koutsouveli, Vasiliki; Lagnel, Jacques; Kollias, Spyridon; Tsigenopoulos, Costas S; Arvanitidis, Christos; Magoulas, Antonios; Dounas, Costas; Dailianis, Thanos

A de novo transcriptome assembly for the bath sponge Spongia officinalis, adjusting for microsymbionts Journal Article

BMC Research Notes, 12 (1), pp. 813, 2019, ISSN: 1756-0500.

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Natsidis, Paschalis; Tsakogiannis, Alexandros; Pavlidis, Pavlos; Tsigenopoulos, Costas S; Manousaki, Tereza

Phylogenomics investigation of sparids (Teleostei: Spariformes) using high-quality proteomes highlights the importance of taxon sampling Journal Article

Communications Biology, 2 (1), pp. 400, 2019, ISSN: 2399-3642.

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Exadactylos, Athanasios; Vafidis, Dimitrios; Tsigenopoulos, Costas; Gkafas, Georgios

High Connectivity of the White Seabream (Diplodus sargus, L. 1758) in the Aegean Sea, Eastern Mediterranean Basin Journal Article

Animals, 9 (11), pp. 979, 2019, ISSN: 2076-2615, (BIODIV).

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Kyriakis, Dimitrios; Kanterakis, Alexandros; Manousaki, Tereza; Tsakogiannis, Alexandros; Tsagris, Michalis; Tsamardinos, Ioannis; Papaharisis, Leonidas; Chatziplis, Dimitris; Potamias, George; Tsigenopoulos, Costas S

Scanning of Genetic Variants and Genetic Mapping of Phenotypic Traits in Gilthead Sea Bream Through ddRAD Sequencing Journal Article

Frontiers in Genetics, 10 , pp. 675, 2019, ISSN: 1664-8021.

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2018

Pauletto, Marianna; Manousaki, Tereza; Ferraresso, Serena; Babbucci, Massimiliano; Tsakogiannis, Alexandros; Louro, Bruno; Vitulo, Nicola; Quoc, Viet Ha; Carraro, Roberta; Bertotto, Daniela; Franch, Rafaella; Maroso, Francesco; Aslam, Muhammad L; Sonesson, Anna K; Simionati, Barbara; Malacrida, Giorgio; Cestaro, Alessandro; Caberlotto, Stefano; Sarropoulou, Elena; Mylonas, Costantinos C; Power, Deborah M; Patarnello, Tomaso; Canario, Adelino V M; Tsigenopoulos, Costas; Bargelloni, Luca

Genomic analysis of Sparus aurata reveals the evolutionary dynamics of sex-biased genes in a sequential hermaphrodite fish Journal Article

Communications Biology, 1 (1), pp. 119, 2018, ISSN: 2399-3642.

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Tsakogiannis, Alexandros; Manousaki, Tereza; Lagnel, Jacques; Papanikolaou, Nikolaos; Papandroulakis, Nikos; Mylonas, Constantinos C; Tsigenopoulos, Costas S

The gene toolkit implicated in functional sex in Sparidae hermaphrodites: inferences from comparative transcriptomics Journal Article

Frontiers in Genetics, 9 , pp. 749, 2018, (Publisher: Frontiers).

BibTeX

Tsakogiannis, A; Manousaki, T; Lagnel, J; Sterioti, A; Pavlidis, M; Papandroulakis, N; Mylonas, CC; Tsigenopoulos, CS

The transcriptomic signature of different sexes in two protogynous hermaphrodites: Insights into the molecular network underlying sex phenotype in fish Journal Article

Scientific reports, 8 (1), pp. 3564, 2018, (Publisher: Nature Publishing Group).

BibTeX

Manousaki, T; Tsakogiannis, A; Lagnel, J; Kyriakis, D; Duncan, N; Estevez, A; Tsigenopoulos, CS

Muscle and liver transcriptome characterization and genetic marker discovery in the farmed meagre, Argyrosomus regius Journal Article

Marine Genomics, 39 , pp. 39–44, 2018, (Publisher: Elsevier).

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Fjelldal, P G; Solberg, M F; Glover, K A; Folkedal, O; Nilsson, J; Finn, R N; Hansen, T J; Tsigenopoulos, C

Documentation of multiple species of marine fish trapped in Atlantic salmon sea-cages in Norway Journal Article

Aquatic Living Resources, 31 , 2018, ISSN: 09907440, (Publisher: EDP Sciences).

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Viret, A; Tsaparis, D; Tsigenopoulos, C S; Berrebi, P; Sabatini, A; Arculeo, M; Fassatoui, C; Magoulas, A; Marengo, M; Morales-Nin, B; Caill-Milly, N; Durieux, E D H

Absence of spatial genetic structure in common dentex (Dentex dentex Linnaeus, 1758) in the Mediterranean Sea as evidenced by nuclear and mitochondrial molecular markers Journal Article

PLoS ONE, 13 (9), 2018, ISSN: 19326203, (Publisher: Public Library of Science).

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2017

Bodur, T; Tsigenopoulos, C; Cagatay, I T

Genetic structure of wild European sea bass (Dicentrarchus labrax L, 1758) populations in aegean and levantine sea using microsatellite markers Journal Article

Turkish Journal of Fisheries and Aquatic Sciences, 17 (1), 2017, ISSN: 13032712, (Publisher: Central Fisheries Research Inst).

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Fanini, L; Zampicinini, G; Tsigenopoulos, C S; Barboza, F R; Lozoya, J P; Gómez, J; Celentano, E; Lercari, D; Marchetti, G M; Defeo, O

Life-history, substrate choice and Cytochrome Oxidase I variations in sandy beach peracaridans along the Rio de la Plata estuary Journal Article

Estuarine, Coastal and Shelf Science, 187 , pp. 152–159, 2017, ISSN: 02727714, (Publisher: Academic Press).

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2016

Guinand, B; Chauvel, C; Lechene, M; Tournois, J; Tsigenopoulos, C S; Darnaude, A M; McKenzie, D J; Gagnaire, P A

Candidate gene variation in gilthead sea bream reveals complex spatiotemporal selection patterns between marine and lagoon habitats Journal Article

Marine Ecology Progress Series, 558 , pp. 115–127, 2016, ISSN: 01718630, (Publisher: Inter-Research).

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2015

Rigos, G; Henry, M; Tsigenopoulos, C

Sparicotyle chrysophrii and gilthead sea bream - Potential experimental infection model Journal Article

Bulletin of the European Association of Fish Pathologists, 35 (2), pp. 50–54, 2015, ISSN: 01080288, (Publisher: FRS Marine Laboratory).

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Henry, M A; Nikoloudaki, C; Tsigenopoulos, C; Rigos, G

Strong effect of long-term Sparicotyle chrysophrii infection on the cellular and innate immune responses of gilthead sea bream, Sparus aurata Journal Article

Developmental and Comparative Immunology, 51 (1), pp. 185–193, 2015, ISSN: 0145305X, (Publisher: Elsevier Ltd).

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Kaitetzidou, E; Xiang, J; Antonopoulou, E; Tsigenopoulos, C S; Sarropoulou, E

Dynamics of gene expression patterns during early development of the European seabass (Dicentrarchus labrax) Journal Article

Physiological Genomics, 47 (5), pp. 158–169, 2015, ISSN: 10948341, (Publisher: American Physiological Society).

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Loukovitis, D; Ioannidi, B; Chatziplis, D; Kotoulas, G; Magoulas, A; Tsigenopoulos, C S

Loss of genetic variation in Greek hatchery populations of the European sea bass (Dicentrarchus labrax L.) as revealed by microsatellite DNA analysis Journal Article

Mediterranean Marine Science, 16 (1), pp. 197–200, 2015, ISSN: 1108393X, (Publisher: Hellenic Centre for Marine Research).

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Brown, C; Miltiadou, D; Tsigenopoulos, C S

Prevalence and survival of escaped European seabass Dicentrarchus labrax in Cyprus identified using genetic markers Journal Article

Aquaculture Environment Interactions, 7 , pp. 49–59, 2015.

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Guinand, B; Quéré, N; Desmarais, E; Lagnel, J; Tsigenopoulos, C S; Bonhomme, F

From the laboratory to the wild: salinity-based genetic differentiation of the European sea bass (Dicentrarchus labrax) using gene-associated and gene-independent microsatellite markers Journal Article

Marine Biology, 162 , pp. 515–538, 2015.

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Ilias, A; Lagnel, J; Kapantaidaki, D E; Roditakis, E; Tsigenopoulos, C S; Vontas, J; Tsagkarakou, A

Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype Journal Article

BMC Genomics, 16 , pp. 939, 2015.

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Manousaki, T; Tsakogiannis, A; Taggart, B J; Chatziplis, D; Mylonas, C C; Tsigenopoulos, C S

Linkage mapping in common pandora, Pagellus erythrinus, using ddRAD methodology Inproceedings

11th Panhellenic Symposium on Oceanography and Fisheries, pp. 69–72, Mytilene, Lesvos island, Greece, 2015, ISBN: 978-960-9798-08-2.

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Tsaparis, D; Kyriakis, D; Darivianakis, S; Fontaine, P; Tsigenopoulos, C S

Assessing genetic diversity in domesticated pikeperch (Sander lucioperca) broodstocks Inproceedings

11th Panhellenic Symposium on Oceanography and Fisheries, pp. 261–264, Mytilene, Lesvos island, Greece, 2015, ISBN: 978-960-9798-08-2.

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2014

Zhan, S H; Glick, L; Tsigenopoulos, C S; Otto, S P; Mayrose, I

Comparative analysis reveals that polyploidy does not decelerate diversification in fish Journal Article

Journal of Evolutionary Biology, 27 (2), pp. 391–403, 2014, ISSN: 1010061X.

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Tsigenopoulos, C S; Louro, B; Chatziplis, D; Lagnel, J; Vogiatzi, E; Loukovitis, D; Franch, R; Sarropoulou, E; Power, D M; Patarnello, T; Mylonas, C C; Magoulas, A; Bargelloni, L; Canario, A; Kotoulas, G

Second generation genetic linkage map for the gilthead sea bream Sparus aurata L. Journal Article

Marine Genomics, 18 (PA), pp. 77–82, 2014, ISSN: 18747787, (Publisher: Elsevier B.V.).

Abstract | Links | BibTeX

Manousaki, Tereza; Tsakogiannis, Alexandros; Lagnel, Jacques; Sarropoulou, Elena; Xiang, Jenny Z; Papandroulakis, Nikos; Mylonas, Constantinos C; Tsigenopoulos, Costas S

The sex-specific transcriptome of the hermaphrodite sparid sharpsnout seabream (Diplodus puntazzo) Journal Article

BMC genomics, 15 (1), pp. 655, 2014, (Publisher: BioMed Central).

BibTeX

Berrebi, Patrick; Chenuil, Anne; Kotlík, Petr; Machordom, Annie; Tsigenopoulos, C S

Disentangling the evolutionary history of the genus Barbus sensu lato, a twenty years adventure Incollection

Professor Carlos Almaça (1934-2010) - Estado da Arte em Áreas Cientificas que Desenvolveu, pp. 29–55, Museu Nacional de História Natural e da Ciência, Lisboa, 2014, ISBN: 978-972-98196-6-7, (Backup Publisher: Museu Nacional de História Natural e da Ciência).

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2013

Gkafas, Ga; Tsigenopoulos, C; Magoulas, A; Panagiotaki, P; Vafidis, D; Mamuris, Z; Exadactylos, A

Population subdivision of saddled seabream Oblada melanura in the Aegean Sea revealed by genetic and morphometric analyses Journal Article

Aquatic Biology, 18 (1), pp. 69–80, 2013, ISSN: 1864-7782, 1864-7790.

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Loukovitis, D; Batargias, C; Sarropoulou, E; Apostolidis, A P; Kotoulas, G; Magoulas, A; Tsigenopoulos, C S; Chatziplis, D

Quantitative trait loci affecting morphology traits in gilthead seabream (Sparus aurata L.) Journal Article

Animal Genetics, 44 (4), pp. 480–483, 2013, ISSN: 02689146.

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Somarakis, S; Pavlidis, M; Saapoglou, C; Tsigenopoulos, C S; Dempster, T

Evidence for 'escape through spawning' in large gilthead sea bream Sparus aurata reared in commercial sea-cages Journal Article

Aquaculture Environment Interactions, 3 (2), pp. 135–152, 2013, ISSN: 1869215X.

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2012

Quéré, Nolwenn; Desmarais, Erick; Tsigenopoulos, Costas S; Belkhir, Khalid; Bonhomme, François; Guinand, Bruno

Gene flow at major transitional areas in sea bass (Dicentrarchus labrax) and the possible emergence of a hybrid swarm Journal Article

Ecology and Evolution, 2 (12), pp. 3061–3078, 2012, ISSN: 20457758.

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Boyen, C; Heip, C; Cury, P; Baisnée, P-F; Brownlee, C; Tessmar-Raible, K; Allen, I; Arvanitidis, C; Austen, M; Bolhuis, H; Bouget, F-Y; Clark, M; Coll-Montón, M; Crise, A; Dupont, S; Garcon, V; Grigorov, I; Hummel, H; Ianora, A; Kooistra, W; Mariani, P; Möllmann, C; Sköld, Nilsson H; Not, F; Olsen, J; Pinto, Souza I; Queguiner, B; Reygondeau, G; d’Alcala, Ribera M; Santos, Serrão R; Sluijs, A; Soetaert, K; Solidoro, C; Thorndyke, M; Tsigenopoulos, C S; Viard, F; Volckaert, F; textbackslash, J M Węs

EuroMarine Research Strategy Report Technical Report

2012, (Publisher: EUROMARINE Project Type: Report).

Abstract | Links | BibTeX

Vogiatzi, E; Hanel, R; Dailianis, Thanos; Lagnel, J; Hassan, M; Magoulas, A; Tsigenopoulos, C S

Description of microsatellite markers in four mullids based on the development and cross-species amplification of 18 new markers in red mullet (Mullus barbatus) Journal Article

Biochemical Systematics and Ecology, 44 , pp. 279 – 285, 2012.

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Makridis, P; Ferreira, T; Kokou, F; Tsigenopoulos, C S; Divanach, P

Quantitative and Qualitative Aspects of Bacterial Communities Associated with Cultures of Chlorella minutissima Journal Article

Journal of the World Aquaculture Society, 43 , pp. 571 – 578, 2012.

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Coscia, I; Vogiatzi, E; Kotoulas, G; Tsigenopoulos, C S; Mariani, S

Exploring neutral and adaptive processes in expanding populations of gilthead sea bream, Sparus aurata L., in the North-East Atlantic Journal Article

Heredity, 108 (5), pp. 537–546, 2012, ISSN: 0018067X.

Abstract | Links | BibTeX

Loukovitis, D; Sarropoulou, E; Vogiatzi, E; Tsigenopoulos, C S; Kotoulas, G; Magoulas, A; Chatziplis, D

Genetic variation in farmed populations of the gilthead sea bream Sparus aurata in Greece using microsatellite DNA markers Journal Article

Aquaculture Research, 43 (2), pp. 239–246, 2012, ISSN: 1355557X.

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Loukovitis, D; Sarropoulou, E; Batargias, C; Apostolidis, A P; Kotoulas, G; Tsigenopoulos, C S; Chatziplis, D

Quantitative trait loci for body growth and sex determination in the hermaphrodite teleost fish Sparus aurata L. Journal Article

Animal Genetics, 43 (6), pp. 753–759, 2012, ISSN: 02689146.

Abstract | Links | BibTeX

Chaoui, L; Gagnaire, P-A; Guinand, B; Quignard, J-P; Tsigenopoulos, C S; Kara, M H; Bonhomme, F

Microsatellite length variation in candidate genes correlates with habitat in the gilthead sea bream Sparus aurata Journal Article

Molecular Ecology, 21 , pp. 5497–5511, 2012.

BibTeX

Coscia, Ilaria; Vogiatzi, Emmanouella; Kotoulas, Giorgios; Tsigenopoulos, C S; Mariani, Stefano

Neutral and adaptive genetic variation in expanding populations of gilthead sea bream, Sparus aurata L., in the North-East Atlantic Journal Article

Heredity, 108 , pp. 537–546, 2012.

Abstract | BibTeX

Limborg, M; Hanel, R; Debes, P V; Ring, A K; Andre, C; Tsigenopoulos, C S

Disentangling evolutionary processes shaping population structure across marine transition zones: Insights from a Pan European small pelagic fish Journal Article

Heredity, 109 , pp. 96–107, 2012.

BibTeX

Limborg, M T; Hanel, R; Debes, P V; Ring, A K; André, C; Tsigenopoulos, C S; Bekkevold, D

Imprints from genetic drift and mutation imply relative divergence times across marine transition zones in a pan-European small pelagic fish (Sprattus sprattus) Journal Article

Heredity, 109 , pp. 96 – 107, 2012.

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Lefkaditou, E; Tsigenopoulos, C S; Alidromiti, C; Haralabous, J

On the occurrence of Alloteuthis subulata in the Eastern Ionian Sea and its distinction from the sympatric Alloteuthis media Journal Article

Journal of Biological Research, 17 , pp. 169–175, 2012.

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Vasileiadou, A; Sarropoulou, E; Tsigenopoulos, C S; Reizopoulou, S; Nikolaidou, A; Orfanidis, S; Simboura, N; Kotoulas, G; Arvanitidis, C

Genetic vs community diversity patterns of macrobenthic species: preliminary results from the lagoonal ecosystem Journal Article

Transitional Waters Bulletin, 6 , pp. 20–33, 2012.

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2011

Hanel, Reinhold; Tsigenopoulos, Costas S

Phylogeny, Evolution and Taxonomy of Sparids with Some Notes on their Ecology and Biology Incollection

Pavlidis, Michail A; Mylonas, Constantinos C (Ed.): Sparidae, pp. 51–73, Wiley-Blackwell, Oxford, UK, 2011, ISBN: 978-1-4443-9221-0 978-1-4051-9772-4.

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Dailianis, T; Tsigenopoulos, C S; Dounas, C; Voultsiadou, E

Genetic diversity of the imperilled bath sponge Spongia officinalis Linnaeus, 1759 across the Mediterranean Sea: Patterns of population differentiation and implications for taxonomy and conservation Journal Article

Molecular Ecology, 20 (18), pp. 3757–3772, 2011, ISSN: 09621083.

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Loukovitis, D; Sarropoulou, E; Tsigenopoulos, C S; Batargias, C; Magoulas, A; Apostolidis, A P; Chatziplis, D; Kotoulas, G

Quantitative Trait Loci involved in sex determination and body growth in the gilthead sea bream (Sparus aurata L.) through targeted genome scan Journal Article

PLoS ONE, 6 (1), 2011, ISSN: 19326203.

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Boulton, K; Massault, C; Houston, R D; de Koning, D J; Haley, C S; Bovenhuis, H; Batargias, C; Canario, A V M; Kotoulas, G; Tsigenopoulos, C S

QTL affecting morphometric traits and stress response in the gilthead seabream (Sparus aurata) Journal Article

Aquaculture, 319 (1-2), pp. 58–66, 2011, ISSN: 00448486.

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Vogiatzi, E; Lagnel, J; Pakaki, V; Louro, B; Canario, A V M; Reinhardt, R; Kotoulas, G; Magoulas, A; Tsigenopoulos, C S

In silico mining and characterization of simple sequence repeats from gilthead sea bream (Sparus aurata) expressed sequence tags (EST-SSRs); PCR amplification, polymorphism evaluation and multiplexing and cross-species assays Journal Article

Marine Genomics, 4 (2), pp. 83–91, 2011, ISSN: 18747787.

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Rabaoui, Lotfi; Mejri, Randa; Tlig-Zouari, Sabiha; Bahri, Lilia; Hassine, Oum Kalthoum Ben; Tsigenopoulos, C S

Genetic differentiation among populations of the endangered fan mussel Pinna nobilis (Mollusca) along the Tunisian coastline Journal Article

Hydrobiologia, 678 , pp. 99–111, 2011.

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2010

Katharios, P; Tsigenopoulos, C S

First report of nodavirus outbreak in cultured juvenile shi drum, Umbrina cirrosa L., in Greece Journal Article

Aquaculture Research, 42 , pp. 147–152, 2010, ISSN: 1355557X.

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Tsigenopoulos, C S; Kasapidis, P; Berrebi, P

Phylogenetic relationships of hexaploid large-sized barbs (genus Labeobarbus, Cyprinidae) based on mtDNA data Journal Article

Molecular Phylogenetics and Evolution, 56 (2), pp. 851–856, 2010, ISSN: 10557903.

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Dailianis, Thanos; Tsigenopoulos, C S

Characterization of polymorphic microsatellite markers for the endangered Mediterranean bath sponge Spongia officinalis L Journal Article

Conservation Genetics, 11 (3), pp. 1155–1158, 2010.

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Louro, B; Passos, Ana Lúcia S; Souche, Erika L; Tsigenopoulos, C S; Beck, Alfred; Lagnel, J; Bonhomme, F; Cancela, Leonor; Cerdà, Joan; Clark, Melody S; Lubzens, Esther; A, Magoulas; Planas, Josep V; Volckaert, F A; Reinhardt, Richard; Canario, Adelino V M

Gilthead sea bream (Sparus auratus) and European sea bass (Dicentrarchus labrax) expressed sequence tags: Characterization, tissue-specific expression and gene markers Journal Article

Marine Genomics, 3 (3-4), pp. 179–191, 2010, (ISBN: 1874-7787).

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2009

Lagnel, J; Tsigenopoulos, C S; Iliopoulos, I

NOBLAST and JAMBLAST: New options for BLAST and a Java application manager for BLAST results Journal Article

Bioinformatics, 25 , pp. 824 – 826, 2009.

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Vogiatzi, E; Kalogianni, E; Giakoumi, S; Magoulas, A; Tsigenopoulos, C S

Characterization of polymorphic microsatellite markers in valencia letourneuxi (Valenciidae) and cross-amplification in two other cyprinodontiform species Journal Article

Conservation Genetics Resources, 1 (1), pp. 27–30, 2009, ISSN: 18777252.

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2008

Apostolidis, Apostolos P; Loukovitis, Demetrios; Tsigenopoulos, Costas S

Genetic characterization of brown trout (Salmo trutta) populations from the Southern Balkans using mtDNA sequencing and RFLP analysis Journal Article

Hydrobiologia, 600 (1), pp. 169–176, 2008, ISSN: 0018-8158, 1573-5117.

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Dailianis, Thanos; Limborg, M; Hanel, R; Bekkevold, D; Lagnel, J; A, Magoulas; Tsigenopoulos, C S

Characterization of nine polymorphic microsatellite markers in sprat (Sprattus sprattus L.) Journal Article

Molecular Ecology Resources, 8 (4), pp. 861–863, 2008, (ISBN: 1755-0998).

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Kyriazi, P; Poulakakis, N; Parmakelis, A; Crochet, P A; Moravec, J; Rastegar-Pouyani, N; Tsigenopoulos, C S; Magoulas, A; Mylonas, M; Lymberakis, P

Mitochondrial DNA reveals the genealogical history of the snake-eyed lizards (Ophisops elegans and O. occidentalis) (Sauria: Lacertidae) Journal Article

Molecular Phylogenetics and Evolution, 49 , pp. 795 – 805, 2008.

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Tsagkarakou, A; Tsigenopoulos, C S; Gorman, K; Kristoffersen, JB; Lagnel, J; Bedford, D

Biotype monitoring and genetic relationships of Bemisia tabaci in Greece: Mitochondrial DNA and microsatellite polymorphism Journal Article

Journal of Insect Science, 8 , pp. 48–48, 2008, (ISBN: 1536-2442).

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Volckaert, F A; Batargias, C; Canário, A; Chatziplis, D; Chistiakov, D A; Haley, C S; Libertini, A; Tsigenopoulos, C S

The European sea bass (Dicentrarchus labrax L.) and its genomic resources Incollection

Kocher, T D; Chittaranjan, K (Ed.): Genome Mapping and Genomics in Fishes and Aquatic Animals, 2 , pp. 117–133, Springer Verlag, 2008, (Backup Publisher: Springer Verlag).

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Chistiakov, D A; Tsigenopoulos, C S; Lagnel, J; Guo, Y -M; Hellemans, B; Haley, C S; Volckaert, F A M; Kotoulas, G

A combined AFLP and microsatellite linkage map and pilot comparative genomic analysis of European sea bass Dicentrarchus labrax L. Journal Article

Animal Genetics, 39 (6), pp. 623–634, 2008, ISSN: 02689146.

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Volckaert, F A M; Batargias, C; Canario, A; Chatziplis, D; Chistiakov, D; Haley, C; Libertini, A; Tsigenopoulos, C

European Sea Bass Incollection

Kocher, Thomas; Kole, Chittaranjan (Ed.): Genome Mapping and Genomics in Fishes and Aquatic Animals, 2 , pp. 117–133, Springer Berlin Heidelberg, Berlin, Heidelberg, 2008, ISBN: 978-3-540-73836-7 978-3-540-73837-4, (Series Title: Genome Mapping Genomics Animals).

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Guinand, Bruno; Dujardin, Emilie; Dufour, Vincent; Tsigenopoulos, Costas S

Characterisation of genetic structure of Dicentrarchus labrax larvae in two nurseries of the Gulf of Lions (NW Mediterranean) Journal Article

Aquatic Living Resources, 21 (1), pp. 81–87, 2008, ISSN: 0990-7440, 1765-2952.

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2007

Tsagkarakou, A; Tsigenopoulos, C S; Gorman, K; Lagnel, J; Bedford, I D

Biotype status and genetic polymorphism of the whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) in Greece: mitochondrial DNA and microsatellites Journal Article

Bulletin of Entomological Research, 97 (1), pp. 29–40, 2007, ISSN: 0007-4853, 1475-2670.

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Chatziplis, D; Batargias, C; Tsigenopoulos, C S; Magoulas, A; Kollias, S; Kotoulas, G; Volckaert, F A M; Haley, C S

Mapping quantitative trait loci in European sea bass (Dicentrarchus labrax): The BASSMAP pilot study Journal Article

Aquaculture, 272 (SUPPL. 1), pp. S172–S182, 2007, ISSN: 00448486.

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Lymberakis, P; Poulakakis, N; Manthalou, G; Tsigenopoulos, C S; Magoulas, A; Mylonas, M

Mitochondrial phylogeography of Rana (Pelophylax) populations in the Eastern Mediterranean region Journal Article

Molecular Phylogenetics and Evolution, 44 , pp. 115 – 125, 2007.

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Volckaert, F A M J; Batargias, C; Bonhomme, F; Canario, A; Chistiakov, D; Choudhuri, J V; Galibert, F; Georgoudis, A; Haley, C S; Hellemans, B; Kuhl, H; Kotoulas, G; Law, A; Libertini, A; Magoulas, A; McAndrew, B J; Reinhardt, R; Senger, F; Souche, E; Tsigenopoulos, C; Whitaker, H A

Genomic resources for the aquaculture of European sea bass Journal Article

Aquaculture, 272 , pp. S316–S317, 2007, ISSN: 00448486.

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2006

Franch, R; Louro, B; Tsalavouta, M; Chatziplis, D; Tsigenopoulos, C S; Sarropoulou, E; Antonello, J; Magoulas, A; Mylonas, C C; Babbucci, M; Patarnello, T; Power, D M; Kotoulas, G; Bargelloni, L

A genetic linkage map of the hermaphrodite teleost fish Sparus aurata L. Journal Article

Genetics, 174 (2), pp. 851–861, 2006, ISSN: 00166731.

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2005

Mantziou, G; Antoniou, A; Poulakakis, N; Goulielmos, G; Tsigenopoulos, C S; Pinou, T; Mylonas, M

Isolation and characterization of six polymorphic microsatellite markers in the freshwater turtle Mauremys rivulata (Testudines: Geoemydidae) Journal Article

Molecular Ecology Notes, 5 (4), pp. 727–729, 2005.

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Poulakakis, N; Lymberakis, P; Tsigenopoulos, C S; Magoulas, A; Mylonas, M

Phylogenetic relationships and evolutionary history of snake-eyed skink Ablepharus kitaibelii (Sauria: Scincidae) Journal Article

Molecular Phylogenetics and Evolution, 34 , pp. 245 – 256, 2005.

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Chistiakov, D A; Hellemans, B; Haley, C S; Law, A S; Tsigenopoulos, C S; Kotoulas, G; Bertotto, D; Libertini, A; Volckaert, F A M

A microsatellite linkage map of the European sea bass Dicentrarchus labrax L. Journal Article

Genetics, 170 (4), pp. 1821–1826, 2005, ISSN: 00166731.

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2004

Chistiakov, D A; Hellemans, B; Tsigenopoulos, C S; Law, A S; Bartley, N; Bertotto, D; Libertini, A; Kotoulas, G; Haley, C S; Volckaert, F A M

Development and linkage relationships for new microsatellite markers of the sea bass (Dicentrarchus labrax L.) Journal Article

Animal Genetics, 35 (1), pp. 53–57, 2004, ISSN: 02689146.

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2003

Tsigenopoulos, C S; Hellemans, B; Chistiakov, D A; Libertini, A; Kotoulas, G; Volckaert, F

Eleven new microsatellites of the sea bass (Dicentrarchus labrax L.) Journal Article

Molecular Ecology Notes, 3 (3), pp. 352–354, 2003, ISSN: 14718278.

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Berrebi, P; Tsigenopoulos, C S

Phylogenetic organization of the genus Barbus sensu stricto: A review based on data using molecular markers Incollection

Banarescu, P; Bogutskaya, N G (Ed.): The Freshwater Fishes of Europe, Vol. 5/II: Cyprinidae, Part II: Barbus, pp. 11–22, AULA-Verlag, 2003, (Backup Publisher: AULA-Verlag).

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Tsigenopoulos, C S; Durand, J D; Ünlü, E; Berrebi, P

Rapid radiation of the Mediterranean Luciobarbus species (Cyprinidae) after the Messinian salinity crisis of the Mediterranean Sea, inferred from mitochondrial phylogenetic analysis Journal Article

Biological Journal of the Linnean Society, 80 , pp. 207 – 222, 2003.

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2002

Tsigenopoulos, Costas S; Kotlík, Petr; Berrebi, Patrick

Biogeography and pattern of gene flow among Barbus species (Teleostei: Cyprinidae) inhabiting the Italian Peninsula and neighbouring Adriatic drainages as revealed by allozyme and mitochondrial sequence data Journal Article

Biological Journal of the Linnean Society, 75 (1), pp. 83–99, 2002, ISSN: 00244066, 10958312.

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Berrebi, P; Tsigenopoulos, C S

Contribution des sequences mitochondriales a l’eclatement phylogenetique du genre polyploide Barbus (Teleosteen Cyprinides). Implications biogeographiques Inproceedings

Journées Annuelles de la Société Française de Systématique (SFS) ’Systématique et biogéographie’, pp. 49–56, Biosystema, Paris, France, 2002, (Backup Publisher: Biosystema).

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Durand, J -D; Tsigenopoulos, C S; Ünlü, E; Berrebi, P

Phylogeny and biogeography of the family cyprinidae in the Middle East inferred from cytochrome b DNA - Evolutionary significance of this region Journal Article

Molecular Phylogenetics and Evolution, 22 , pp. 91 – 100, 2002.

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Kotlik, P; Tsigenopoulos, C S; Rab, P; Berrebi, P

Two new Barbus species from the Danube River basin, with redescription of B. petenyi (Teleostei: Cyprinidae) Journal Article

Folia Zoologica, 51 (3), pp. 227–240, 2002.

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Tsigenopoulos, C S; Ráb, P; Naran, D; Berrebi, P

Multiple origins of polyploidy in the phylogeny of southern African barbs (Cyprinidae) as inferred from mtDNA markers Journal Article

Heredity, 88 , pp. 466 – 473, 2002.

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Tsigenopoulos, C S; Ráb, P; Naran, D; Berrebi, P

A television system for determining dynamic thermal fields in self-propagating high-temperature synthesis processes Journal Article

Measurement Techniques, 45 (9), pp. 955–961, 2002, ISSN: 05431972.

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2000

Tsigenopoulos, C S; Berrebi, P

Molecular phylogeny of north Mediterranean freshwater barbs (genus Barbus: Cyprinidae) inferred from cytochrome b sequences: Biogeographic and systematic implications Journal Article

Molecular Phylogenetics and Evolution, 14 , pp. 165 – 179, 2000.

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1999

Tsigenopoulos, C S; Karakousis, Y; Berrebi, P

The North Mediterranean Barbus lineage : phylogenetic hypotheses and taxonomic implications based on allozyme data Journal Article

Journal of Fish Biology, 54 (2), pp. 267–286, 1999.

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1996

Tsigenopoulos, C S; Karakousis, Y

Phylogenetic relationships of Leuciscus keadicus, an endemic cyprinid species from Greece, with other species of the genus Leuciscus Journal Article

Folia Zoologica, 45 , pp. 87–93, 1996.

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